BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZD07FM1.SCF screened BAC_end (958 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1059 1255 0.0 >3x_Contig1059 Length = 3822 Score = 1255 bits (633), Expect = 0.0 Identities = 676/684 (98%), Gaps = 5/684 (0%) Strand = Plus / Minus Query: 87 taatcagaaacgaaatggcctctgatgtctataccacggaattgcttgcagatatcatca 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 taatcagaaacgaaatggcctctgatgtctataccacggaattgcttgcagatatcatca 1145 Query: 147 ctgaacaatcaaatgacagatttggtgtcagaaccgctattccaggtcatgttcaacaag 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1144 ctgaacaatcaaatgacagatttggtgtcagaaccgctattccaggtcatgttcaacaag 1085 Query: 207 gtggtgtaccatcctccaaggatcgtgtcattgcatccagattcgctgtgaagtgtgtca 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 gtggtgtaccatcctccaaggatcgtgtcattgcatccagattcgctgtgaagtgtgtca 1025 Query: 267 agttcatcgaacaatggaataagaagaacaccgctgcagacaatgaggatttcaagatcc 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1024 agttcatcgaacaatggaataagaagaacaccgctgcagacaatgaggatttcaagatcc 965 Query: 327 tacgattcaattacgtgaacggtgtgaagcaatacactgtccttgacgaagatctatctg 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 964 tacgattcaattacgtgaacggtgtgaagcaatacactgtccttgacgaagatctatctg 905 Query: 387 ccgctgtgatttgtgtcaatggttccaagatttctttcaagccaatcgctcatatctggg 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 904 ccgctgtgatttgtgtcaatggttccaagatttctttcaagccaatcgctcatatctggg 845 Query: 447 aaaacgaaaccaatatcgaactcagaaagggacaagaaattcactgggaagaatacaacg 506 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 844 aaaacgaaaccaatatcgaactcagaaagggacaagaaattcactgggaagaatacaacg 785 Query: 507 agatcggagatattctttccngcagaagtatgctaagaagaaagatccaaaaggaacaac 566 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 784 agatcggagatattctttccggcagaagtatgctaagaagaaagatccaaaaggaacaac 725 Query: 567 aagaagaatcctctttaccaagtgtggcagacactccattgtcatctgtcacagtttcta 626 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 724 aagaagaatcctctttaccaagtgtggcagacactccattgtcatctgtcacagtttcta 665 Query: 627 cctctgctgcaaaagaagactcagccttgtatgtttaaaagactaaccctctttacctgt 686 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 664 cctctgctgcaaaagaagactcagccttgtatgtttaaaagactaaccctc-ttacctgt 606 Query: 687 catgaaaagttctgaacattagaaatttcatcatatgccatgtattaccgatttctcgtt 746 |||||||||||||||||||||| || |||||||||||||||||| |||||| |||||||| Sbjct: 605 catgaaaagttctgaacattag-aagttcatcatatgccatgta-taccga-ttctcgtt 549 Query: 747 tcatttgtacaattaatattttac 770 |||| ||||||| ||||||||||| Sbjct: 548 tcatatgtacaa-taatattttac 526 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7358 Number of Sequences: 1807 Number of extensions: 7358 Number of successful extensions: 52 Number of sequences better than 1.0e-20: 1 length of query: 958 length of database: 10,358,551 effective HSP length: 16 effective length of query: 942 effective length of database: 10,329,639 effective search space: 9730519938 effective search space used: 9730519938 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)