BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZD07FM1.SCF screened BAC_end
         (958 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1059                                                        1255   0.0  

>3x_Contig1059 
          Length = 3822

 Score = 1255 bits (633), Expect = 0.0
 Identities = 676/684 (98%), Gaps = 5/684 (0%)
 Strand = Plus / Minus

                                                                        
Query: 87   taatcagaaacgaaatggcctctgatgtctataccacggaattgcttgcagatatcatca 146
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 taatcagaaacgaaatggcctctgatgtctataccacggaattgcttgcagatatcatca 1145

                                                                        
Query: 147  ctgaacaatcaaatgacagatttggtgtcagaaccgctattccaggtcatgttcaacaag 206
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 ctgaacaatcaaatgacagatttggtgtcagaaccgctattccaggtcatgttcaacaag 1085

                                                                        
Query: 207  gtggtgtaccatcctccaaggatcgtgtcattgcatccagattcgctgtgaagtgtgtca 266
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 gtggtgtaccatcctccaaggatcgtgtcattgcatccagattcgctgtgaagtgtgtca 1025

                                                                        
Query: 267  agttcatcgaacaatggaataagaagaacaccgctgcagacaatgaggatttcaagatcc 326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 agttcatcgaacaatggaataagaagaacaccgctgcagacaatgaggatttcaagatcc 965

                                                                        
Query: 327  tacgattcaattacgtgaacggtgtgaagcaatacactgtccttgacgaagatctatctg 386
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964  tacgattcaattacgtgaacggtgtgaagcaatacactgtccttgacgaagatctatctg 905

                                                                        
Query: 387  ccgctgtgatttgtgtcaatggttccaagatttctttcaagccaatcgctcatatctggg 446
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904  ccgctgtgatttgtgtcaatggttccaagatttctttcaagccaatcgctcatatctggg 845

                                                                        
Query: 447  aaaacgaaaccaatatcgaactcagaaagggacaagaaattcactgggaagaatacaacg 506
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844  aaaacgaaaccaatatcgaactcagaaagggacaagaaattcactgggaagaatacaacg 785

                                                                        
Query: 507  agatcggagatattctttccngcagaagtatgctaagaagaaagatccaaaaggaacaac 566
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 784  agatcggagatattctttccggcagaagtatgctaagaagaaagatccaaaaggaacaac 725

                                                                        
Query: 567  aagaagaatcctctttaccaagtgtggcagacactccattgtcatctgtcacagtttcta 626
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724  aagaagaatcctctttaccaagtgtggcagacactccattgtcatctgtcacagtttcta 665

                                                                        
Query: 627  cctctgctgcaaaagaagactcagccttgtatgtttaaaagactaaccctctttacctgt 686
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 664  cctctgctgcaaaagaagactcagccttgtatgtttaaaagactaaccctc-ttacctgt 606

                                                                        
Query: 687  catgaaaagttctgaacattagaaatttcatcatatgccatgtattaccgatttctcgtt 746
            |||||||||||||||||||||| || |||||||||||||||||| |||||| ||||||||
Sbjct: 605  catgaaaagttctgaacattag-aagttcatcatatgccatgta-taccga-ttctcgtt 549

                                    
Query: 747  tcatttgtacaattaatattttac 770
            |||| ||||||| |||||||||||
Sbjct: 548  tcatatgtacaa-taatattttac 526


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7358
Number of Sequences: 1807
Number of extensions: 7358
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 958
length of database: 10,358,551
effective HSP length: 16
effective length of query: 942
effective length of database: 10,329,639
effective search space: 9730519938
effective search space used: 9730519938
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)