BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD07RM1.SCF screened BAC_end
(927 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1100 0.0
>3x_Contig1801
Length = 57606
Score = 1100 bits (555), Expect = 0.0
Identities = 653/675 (96%), Gaps = 8/675 (1%)
Strand = Plus / Minus
Query: 49 ttgttcttcttcagtttcaggtgcctttgggttctt-aacaagttgatatccctttgaac 107
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 33234 ttgttcttcttcagtttcaggtgcctttgggttcttcaacaagttgatatccctttgaac 33175
Query: 108 caaactcaaactttggcccctggaaccatcttctctttcgaaagtatagttagaagcatc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33174 caaactcaaactttggcccctggaaccatcttctctttcgaaagtatagttagaagcatc 33115
Query: 168 agcttcgatgtaaaccaaagcacctttcttgacgtattgtgtcatgaaattgatgtggtt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33114 agcttcgatgtaaaccaaagcacctttcttgacgtattgtgtcatgaaattgatgtggtt 33055
Query: 228 agtgttgaaaacagtgacattgaaccagtttgtgttgctgtcctttcttggctgagaagc 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33054 agtgttgaaaacagtgacattgaaccagtttgtgttgctgtcctttcttggctgagaagc 32995
Query: 288 aatggagtatttcaagtaacgagtatcgttagcagtagtaaactcttggtattcgctacc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32994 aatggagtatttcaagtaacgagtatcgttagcagtagtaaactcttggtattcgctacc 32935
Query: 348 aatacggccgataatggacatcttggcanaaatcattggtgcgggcagtggccgaaaagg 407
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 32934 aatacggccgataatggacatcttggca-aaatcattggtgcgggcagtggccgaaaagg 32876
Query: 408 cacggcgttgggctaatctgaacattgggtgtttaattgtttaatgataatgataattta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 32875 cacggcgttgggctaatctgaacattgggtgtttaattgtttaatgataatgataattta 32816
Query: 468 tcactgggctgggaagtatatctgtattttcacacgtattcttctcatactaaattcagt 527
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 32815 tcactgggctgggaagtataactgtattttcacacgtattcttctcatact-aattcagt 32757
Query: 528 c-tgatatttgttaagggtatttataaaaccg-attatatcaaatggtcttataaacaaa 585
| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||
Sbjct: 32756 cttgatatttgttaaggtaatttataaaaccgaattatatcaaatgtctttataaacaaa 32697
Query: 586 aatgtttatgaaccgagagtaagaaatggccca-ttaccataagaaaggacatgcagatg 644
||||| ||||||| |||||||||||||||| || |||| ||||||||| |||||||||||
Sbjct: 32696 aatgtatatgaacggagagtaagaaatggcacatttacaataagaaagaacatgcagatg 32637
Query: 645 cgggaaaagagaaaccgtggccaatgtttcgaattgcaaatggagatttctagtttcttt 704
|||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||| |
Sbjct: 32636 cgggaaaagagaaaccgtgg-caatgtttcgcattgcaaatggaga-ttctagtttctct 32579
Query: 705 tgggacaaattagat 719
|| ||||||||||||
Sbjct: 32578 tgtgacaaattagat 32564
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7309
Number of Sequences: 1807
Number of extensions: 7309
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 927
length of database: 10,358,551
effective HSP length: 16
effective length of query: 911
effective length of database: 10,329,639
effective search space: 9410301129
effective search space used: 9410301129
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)