BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD08FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig995 428 e-120
>3x_Contig995
Length = 2553
Score = 428 bits (216), Expect = e-120
Identities = 352/391 (90%), Gaps = 5/391 (1%)
Strand = Plus / Minus
Query: 497 taaatccttggcttaagatgtactcatggaataattgtactcgttttccagatacaggga 556
||||||||| ||||| || |||||| ||||||||||||| ||||||| |||||||||
Sbjct: 2424 taaatccttttcttaatattaactcatttaataattgtactctttttccatatacaggga 2365
Query: 557 atctattgtagaattctcttgaatctgatttcaactccgaaatgaagcttgatttagtaa 616
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 2364 atctattttataattctctttaatctgatttcaactccgaaatgaagcttgatttagtaa 2305
Query: 617 aagttccctggaattgttttatagaatccgacactgccaatgcattcgcaaacccataga 676
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2304 aagttccctggaattgttttatagaatccgacactgccaatgcatcggcaaacccataga 2245
Query: 677 tattgcgagcgaccatagtcataccatttgaagtctcgattactgatttgntattattga 736
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 2244 tattgcgagcgaccatagtcataccattgaaagtctcgattactgatttgttattattgt 2185
Query: 737 ataagaagatcttttccatacccgcagacaattccaattgaaactgtttgttgttcgcca 796
|||||||| ||||||| ||||| ||||||||| | |||||| |||||||| |||||| ||
Sbjct: 2184 ataagaagttcttttcgataccagcagacaatccaaattgagactgtttg-tgttcgtca 2126
Query: 797 gattcaccgatgaaagggtgctttgaataattccaagttagtggtgggtaaccttaactg 856
|||||||||||||| || ||| |||||||| ||||||| ||| |||| || | | |||||
Sbjct: 2125 gattcaccgatgaagggttgc-ttgaataagtccaagtaagt-gtggttagcataaactg 2068
Query: 857 ccgctttttacaaacggatttcttgggaaat 887
|||| ||||||| ||||| ||||||||||||
Sbjct: 2067 ccgc-ttttacagacgga-ttcttgggaaat 2039
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6611
Number of Sequences: 1807
Number of extensions: 6611
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)