BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD08RM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1719 1193 0.0
>3x_Contig1719
Length = 15804
Score = 1193 bits (602), Expect = 0.0
Identities = 741/778 (95%), Gaps = 7/778 (0%)
Strand = Plus / Plus
Query: 48 accttgtttttttttatgcctgctgactctaggctaatagtcaatgtacccttcggttga 107
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 accttgtttttttttaggcctgctgactctaggctaatagtcaatgtacccttcggttga 767
Query: 108 gaatagttgtggagcaaggtacataaagtgcagcaagattcttggtaggatataagttag 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaatagttgtggagcaaggtacataaagtgcagcaagattcttggtaggatataagttag 827
Query: 168 gtatatttttacataacggttgtttcgttatggatattacaagtagtttttttaagttac 227
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 828 gtatatttttacataacggttgtttcgttatggatattacaagtagtttcgagaagttac 887
Query: 228 tgtcattggagatgttgtttgtcctcttttcattttaatgtcttaatatagtaaatgaca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tgtcattggagatgttgtttgtcctcttttcattttaatgtcttaatatagtaaatgaca 947
Query: 288 ctttaaattaccgaatgggatttaaaccattttctgactccaaggctcgaacaaagattt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 ctttaaattaccgaatgggatttaaaccattttctgactccaaggctcgaacaaagattt 1007
Query: 348 acaaactttaaacacttgctgtaatatcccaccgatctgttcatagagcggcgttcttac 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 acaaactttaaacacttgctgtaatatcccaccgatctgttcatagagcggcgttcttac 1067
Query: 408 aatccgttggacagcaaaatccagcatatattctcttaacctggtaccgtattatggtgg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 aatccgttggacagcaaaatccagcatatattctcttaacctggtaccgtattatggtgg 1127
Query: 468 acgatattgtacgatcttcctcaccgcagcgagatagcagtgtcgaagatgtgtattcgg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 acgatattgtacgatcttcctcaccgcagcgagatagcagtgtcgaagatgtgtattcgg 1187
Query: 528 atttgtactccactttctctcagatgaccaccaccactgcaaatgatatttgatcacgac 587
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 1188 atttgtactccactttctctcagatgaccaccaccactgcaaatgatattgaacaacgac 1247
Query: 588 catacccattcacttggaggacgggtattatgtttgttagttcgac-atttgtgggatgc 646
||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 1248 catacccattcacatggaggacgggtattatgtttgttagttcgacaattggtgggatg- 1306
Query: 647 cttttcggttacgatactggtgtaatttc-gggggtttaattgccatgaatccaaa-gat 704
||||||||||||||||||||||||||||| |||| |||||| || ||||||||||| |||
Sbjct: 1307 cttttcggttacgatactggtgtaatttctggggttttaatagcaatgaatccaaaggat 1366
Query: 705 ttaaactttcttagtttggaaattgggcaaagggaaa-aat-aattttattaaatgggcc 762
|||||||||| ||||||||||||| |||||| ||||| ||| | || ||| | ||| ||
Sbjct: 1367 ttaaactttcatagtttggaaatttggcaaaaggaaataatcacttctataacatgtgct 1426
Query: 763 ggttcatttctaaggatcgataatagctttcccctgggttgacaaattcggtaggaaa 820
|||||| ||| ||||||||||||||| ||||||| || ||||| || ||||||||||
Sbjct: 1427 ggttca-ttcataggatcgataatagcattccccttggctgacagatgcggtaggaaa 1483
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6602
Number of Sequences: 1807
Number of extensions: 6602
Number of successful extensions: 44
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)