BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD09FM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 955 0.0
>3x_Contig1774
Length = 27771
Score = 955 bits (482), Expect = 0.0
Identities = 550/569 (96%), Gaps = 3/569 (0%)
Strand = Plus / Plus
Query: 86 taatttgatatagacatagggcttgt-actgataagaataatatattttggtcctgtgtt 144
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 8034 taatttgatatagacatagggcttgtcactgataagaataatatattttggtcctgtgtt 8093
Query: 145 gaaaacagcggaaggttgtatatcgtgttgaaaacgaaattaacagtaatataggagttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8094 gaaaacagcggaaggttgtatatcgtgttgaaaacgaaattaacagtaatataggagttt 8153
Query: 205 cggttcgtaagttctacgagaaactaaagagatcagataaatttatacgatgtccaaagc 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8154 cggttcgtaagttctacgagaaactaaagagatcagataaatttatacgatgtccaaagc 8213
Query: 265 atttcttcgtagtgcaaagaatttagtcaatgggtactctcaggctcaggttctcgttag 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8214 atttcttcgtagtgcaaagaatttagtcaatgggtactctcaggctcaggttctcgttag 8273
Query: 325 aagtgccacttctaacgataaggacggtccgtccgttgatcagttggaagatttggctga 384
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 8274 aagtgccacttctaacgataaggacggtccgtccgttgatcagttggaagagttggctga 8333
Query: 385 aaggacatttgataacgtggaatttttcgagatcatggatatgttggacaagatattaaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8334 aaggacatttgataacgtggaatttttcgagatcatggatatgttggacaagagattaaa 8393
Query: 445 cgataaaggccggaactggagacatgtcgccaagtcactaacgtgtctagatttcttggt 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8394 cgataaaggccggaactggagacatgtcgccaagtcactaacgtgtctagatttcttggt 8453
Query: 505 gagatgcggatcagagaactgtgtgttctggtgtaaagagaacctttacattatttagac 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 8454 gagatgcggatcagagaactgtgtgttctggtgtaaagagaacctttacattattaagac 8513
Query: 565 gttgcgtgaggttacacacacccnttgatttttaccgagatcgattacggggaaattgtc 624
|||||||||| ||||||||| || ||| ||||||||||||||| |||| || ||||||
Sbjct: 8514 gttgcgtgagtttacacaca-ccgatga-gtttaccgagatcgataacggtgagattgtc 8571
Query: 625 aaattgaaagccatagatttgacggcgtt 653
| | |||| || | ||| |||||||||||
Sbjct: 8572 agagtgaaggcgaaagagttgacggcgtt 8600
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7077
Number of Sequences: 1807
Number of extensions: 7077
Number of successful extensions: 74
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)