BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZD09RM1.SCF screened BAC_end
         (948 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1678                                                        1136   0.0  

>3x_Contig1678 
          Length = 12472

 Score = 1136 bits (573), Expect = 0.0
 Identities = 620/633 (97%), Gaps = 2/633 (0%)
 Strand = Plus / Plus

                                                                        
Query: 45   cttctagggaaggtttaggttactgtgaactaaccccaagtgtcattacaaagcattttg 104
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 8944 cttctagggaaggtttaggttaccgtgaactaaccccaagtgtcattacaaagcattttg 9003

                                                                        
Query: 105  aagatgtgggtttagattcagaaattgccaaccatacacctttgggttctctatccggtg 164
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9004 aagatgtgggtttagattcagaaattgccaaccatacacctttgggttctctatccggtg 9063

                                                                        
Query: 165  gtcaattggttaaagtcgttattgctggtgcaatgtggaataatcctcatttgttgtttt 224
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 9064 gtcaattggttaaagtcgttattgctggtgcaatgtggaataatcctcatttgttggttt 9123

                                                                        
Query: 225  tagatgaacctacaaattatttggatagagactccctaggtgctctagctatggctattc 284
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9124 tagatgaacctacaaattatttggatagagactccctaggtgctctagctatggctattc 9183

                                                                        
Query: 285  gtgagtggactggtggtgttgttatgatttcgcataacaacgaattcgttggtgcactat 344
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9184 gtgagtggactggtggtgttgttatgatttcgcataacaacgaattcgttggtgcactat 9243

                                                                        
Query: 345  gtccagaacaatggattgttgaaaatggtactatggtcccaaaagggtattgctgaaatt 404
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 9244 gtccagaacaatggattgttgaaaatggtactatggt-ccaaaagggtattgctgaaatt 9302

                                                                        
Query: 405  gatcaaagtagattcgaggatggtggtaacacaaacgctgtgggcttaaacgtgaccaaa 464
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9303 gatcaaagtagattcgaggatggtggtaacacaaacgctgtgggcttaaacgtgaccaaa 9362

                                                                        
Query: 465  acaattactgatgacgactctccagctaatatcaaggttagacaaagaaagaagagactc 524
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9363 acaattactgatgacgactctccagctaatatcaaggttagacaaagaaagaagagactc 9422

                                                                        
Query: 525  acaagatatgagaagaaagctcaagccgaacgtcgtagactacgttacatcgaatggcta 584
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9423 acaagaaatgagaagaaagctcaagccgaacgtcgtagactacgttacatcgaatggcta 9482

                                                                        
Query: 585  ttatcaccaaatggtacaccaaaaacccgttgattcagatgatgaaagagatgatgatga 644
            | ||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||
Sbjct: 9483 tcatcaccaaagggtacacc-aaaacccgttgatacagatgatgaaggagatgatgatga 9541

                                             
Query: 645  agaataattctaatcaccatctctgcctttctg 677
             || ||||||||||||| |||||||| ||||||
Sbjct: 9542 tgagtaattctaatcactatctctgcttttctg 9574


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8788
Number of Sequences: 1807
Number of extensions: 8788
Number of successful extensions: 69
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)