BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD10FM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig950 1213 0.0
3x_Contig22 196 6e-50
>3x_Contig950
Length = 3159
Score = 1213 bits (612), Expect = 0.0
Identities = 720/750 (96%), Gaps = 5/750 (0%)
Strand = Plus / Plus
Query: 84 cttgcaagtcatggtggttggcgtgaagacatttatccaaaagggtttggattgttttta 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972 cttgcaagtcatggtggttggcgtgaagacatttatccaaaagggtttggattgttttta 1031
Query: 144 gattattgatgatccatttggggtcttttgttctaaaaatgatatccaatacatctaaag 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 gattattgatgatccatttggggtcttttgttctaaaaatgatatccaatacatctaaag 1091
Query: 204 cattcatacagtaatacaacaagttggctgattcaagatcttgctggatcaagaattttt 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 cattcatacagtaatacaacaagttggctgattcaagatcttgctggatcaagaattttt 1151
Query: 264 cgaaataggacaatttgacaactgcctctggcaggtatccgatggatagtaactcagtta 323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 cgaaataggacaatttgacaactgcctctggcaggtatccgatggatagtaactcagtta 1211
Query: 324 aaacagataatgcctttgatcccaatggcgtttcacaggccctatggttactaacacaaa 383
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 aaacagataatgcctttgatcccaatggcgtttcacaggccctatggttactaacacaaa 1271
Query: 384 tgaaacgaatcaaaaacgccgcaaatgcttcccgttgtgaaagagaggtagaagaagagg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 tgaaacgaatcaaaaacgccgcaaatgcttcccgttgtgaaagagaggtagaagaagagg 1331
Query: 444 taactattccttcagaaccgtccatattgacatcggggtcatccttgctttgagccgaan 503
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 taactattccttcagaaccgtccatattgacatcggggtcatccttgctttgagccgaaa 1391
Query: 504 aggtttgttttttccagtacataactagatcacanagatcaatggttagcgtctgatttt 563
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1392 aggtttgtttttcccagtacataactagatcacaaagatcaatggttagcgtctgatttt 1451
Query: 564 cggtagaagggttggttaaaagggttattctaccaatgtatgatatgatgtttggaatga 623
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1452 cggtagaagggttggttaaaagggttaatctaccaatgtatgatatgatgtttggaatga 1511
Query: 624 acatatctttgtaaaggaaaaatatgtccttttgacttattaagaattgatagaggatgg 683
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1512 acatatctttgtaagggaaaaatatgtccttttgacttattaagaattgatagaggatgg 1571
Query: 684 ttttttgttgggaagttacttcttatttttaaccctcttacccaattaaccccacttatt 743
| ||||||| ||||||||||| || | ||| || |||||||||||||| ||||| || |
Sbjct: 1572 tattttgtt-ggaagttactttctaatattacccttcttacccaattaa-cccacgtagt 1629
Query: 744 tggtttttcggaacccctttgatctatttgctactactggggccaataaagcctaaggaa 803
||| | ||||||| ||||||||||||| |||||||||||| || ||| ||| |||| | |
Sbjct: 1630 tggctcttcggaa-ccctttgatctatctgctactactggtgctaat-aagtctaatg-a 1686
Query: 804 ttcctttccctaaaaccttgctttaatttg 833
||||||| || ||||||||||| ||||||
Sbjct: 1687 ttcctttaccataaaccttgcttcaatttg 1716
>3x_Contig22
Length = 1059
Score = 196 bits (99), Expect = 6e-50
Identities = 294/355 (82%), Gaps = 3/355 (0%)
Strand = Plus / Plus
Query: 97 gtggttggcgtgaagacatttatccaaaagggtttggattgtttttagattattgatgat 156
|||||||| ||||||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 17 gtggttggagtgaaga-atttataaaaaagg-tttggattgtttttagattattgatgat 74
Query: 157 ccatttggggtcttttgttctaaaaatgatatccaatacatctaaagcattcatacagta 216
||||||||| ||||||| |||||||||||| |||| || ||||| ||| ||| ||||
Sbjct: 75 aaatttggggtattttgttataaaaatgatataaaataaatataaagaattaataaagta 134
Query: 217 atacaacaagttggctgattcaagatcttgctggatcaagaatttttcgaaataggacaa 276
||| || ||||||| ||||| ||||| ||| ||||| |||||||||| ||||||||| ||
Sbjct: 135 ataaaaaaagttggatgattaaagatattgatggataaagaatttttagaaataggaaaa 194
Query: 277 tttgacaactgcctctggcaggtatccgatggatagtaactcagttaaaacagataatgc 336
||||| || || | ||| |||||| |||||||||||| | |||||||| ||||||||
Sbjct: 195 tttgaaaaatgtttatgg-aggtataagatggatagtaaataagttaaaaaagataatga 253
Query: 337 ctttgatcccaatggcgtttcacaggccctatggttactaacacaaatgaaacgaatcaa 396
|||||| ||||| |||| | ||| |||||||| ||| | |||||||| |||| ||
Sbjct: 254 atttgataaaaatggagttttaaaggaaatatggttaataaaaaaaatgaaaagaataaa 313
Query: 397 aaacgccgcaaatgcttcccgttgtgaaagagaggtagaagaagaggtaactatt 451
||| | | ||||| || |||||||||||||||||||||||||||||| ||||
Sbjct: 314 aaaagaagaaaatgattaaagttgtgaaagagaggtagaagaagaggtaaatatt 368
Score = 186 bits (94), Expect = 5e-47
Identities = 171/196 (87%), Gaps = 1/196 (0%)
Strand = Plus / Plus
Query: 500 gaanaggtttgttttttccagtacataactagatcacanagatcaatggttagcgtctga 559
||| |||||||||||| |||| |||| ||||| | | |||| ||||||||| || |||
Sbjct: 419 gaaaaggtttgtttttaaaagtaaataaatagataaaaaagattaatggttagagtatga 478
Query: 560 ttttcggtagaagggttggttaaaagggttattctaccaatgtatgatatgatgtttgga 619
|||| |||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 479 ttttaggtagaagggttggttaaaagggttaatataaaaatgtatgatatgatgtttgga 538
Query: 620 atgaacatatctttgtaaaggaaaaatatgtccttttgacttattaagaattgatagagg 679
||||| |||| ||||||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct: 539 atgaaaatatatttgtaagggaaaaatatgtaattttgaattattaagaattgatagagg 598
Query: 680 -atggttttttgttgg 694
||||| |||||||||
Sbjct: 599 tatggtattttgttgg 614
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7012
Number of Sequences: 1807
Number of extensions: 7012
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)