BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD10RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1772 1132 0.0
>3x_Contig1772
Length = 25851
Score = 1132 bits (571), Expect = 0.0
Identities = 630/646 (97%), Gaps = 4/646 (0%)
Strand = Plus / Minus
Query: 45 ctttgcaaagtccaatttcttttcttttt--aaaggtgggggtttctctgactcggaacg 102
||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct: 18650 ctttgcaaagtccaatttcttttctattttcaaaggtgggggtttctctgactcggaacg 18591
Query: 103 acctccgagaattcccgctatcatatccttgaaccaatcctccgttgagaatggatacaa 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18590 acctccgagaattcccgctatcatatccttgaaccaatcctccgttgagaatggatacaa 18531
Query: 163 tgcatgtaaaggagagctgaaataattatcgagatgtatccatatgagcttcgcgggagg 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18530 tgcatgtaaaggagagctgaaataattatcgagatgtatccatatgagcttcgcgggagg 18471
Query: 223 tagtagcatccttatatagttcaaaatttctgtttcttcgtcaagagaggcaggggtgtt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18470 tagtagcatccttatatagttcaaaatttctgtttcttcgtcaagagaggcaggggtgtt 18411
Query: 283 ctcgcttttcgattgtgttttatcagtcagcgactgctctcttgtttgccttacgttgtt 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18410 ctcgcttttcgattgtgttttatcagtcagcgactgctctcttgtttgccttacgttgtt 18351
Query: 343 atcgcattgagttgcctcaaagtagccattgtgattttttgagattttggatccagaact 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18350 atcgcattgagttgcctcaaagtagccattgtgattttttgagattttggatccagaact 18291
Query: 403 tgttcttgactttggggaatcttcgtttgacttaattatagcacttgtattgataatttc 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18290 tgttcttgactttggggaatcttcgtttgacttaattatagcacttgtattgataatttc 18231
Query: 463 tgctagagaaggtctgtttgatcctttctcgtttgttaaaatgccatccaaattctcatc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18230 tgctagagaaggtctgtttgatcctttctcgtttgttaaaatgccatccaaattctcatc 18171
Query: 523 tttcaagtaccttcgagcaaattttgctctttgtgcttgattaccaacctcaaacttcgg 582
|| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 18170 ttcaaggtactttcgagcaaattttgctctttgtgcttgattaccaacctcaaactccga 18111
Query: 583 agtagagtctttaacagggtctcttactccttctacatcattggttttcatcatctggta 642
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||
Sbjct: 18110 agtagagtctttaacagtgtctcttactccttctacatcatt-gttttcatcatctgtta 18052
Query: 643 cattagcactgtccgctttttctgtta-gttgctagtggagcactc 687
||||||||||||| |||||||||||| ||||||||| ||||||||
Sbjct: 18051 cattagcactgtcgtctttttctgttatgttgctagttgagcactc 18006
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7502
Number of Sequences: 1807
Number of extensions: 7502
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)