BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZD11FM1.SCF screened BAC_end (943 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig511 626 e-179 >3x_Contig511 Length = 2409 Score = 626 bits (316), Expect = e-179 Identities = 323/324 (99%), Gaps = 1/324 (0%) Strand = Plus / Minus Query: 85 taagcaactttcgt-cttaaatctggaaatgaagcctcgcttggagattgggaggttgaa 143 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 335 taagcaactttcgtacttaaatctggaaatgaagcctcgcttggagattgggaggttgaa 276 Query: 144 aaaataatctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaat 203 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 275 aaaataatctccacactcattgcgaaaagaattaaacaacttgaaaatctaccctctaat 216 Query: 204 ttgggaacatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctacc 263 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 215 ttgggaacatattctttaaatgatgcgcttgattttgtaactaaagatgatattcctacc 156 Query: 264 ggcgcagacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacg 323 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 155 ggcgcagacgacttcaagttaagagctttggtggagctcaagtccttgaaaatgctaacg 96 Query: 324 aaacagaaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatc 383 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95 aaacagaaatctttgagaaagaggctgattgaaagtgttgcagctaaatcgcataatatc 36 Query: 384 attccatctctccgtgactctcct 407 |||||||||||||||||||||||| Sbjct: 35 attccatctctccgtgactctcct 12 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 8254 Number of Sequences: 1807 Number of extensions: 8254 Number of successful extensions: 79 Number of sequences better than 1.0e-20: 1 length of query: 943 length of database: 10,358,551 effective HSP length: 16 effective length of query: 927 effective length of database: 10,329,639 effective search space: 9575575353 effective search space used: 9575575353 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 50 (99.6 bits)