BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZD11RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1642 1259 0.0
>3x_Contig1642
Length = 16641
Score = 1259 bits (635), Expect = 0.0
Identities = 712/729 (97%), Gaps = 7/729 (0%)
Strand = Plus / Minus
Query: 33 gaatactcacgctttgagcgaagtgattttctgtttaaagttccaacgaaatcagaggca 92
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12573 gaattctcaagctttgagcgaagtgattttctgtttaaagttccaacgaaatcagaggca 12514
Query: 93 accagttggttgaagttaagtcccaaatcagagtgatttgcatcaaggatttgaagagct 152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12513 accagttggttgaagttaagtcccaaatcagagtgatttgcatcaaggatttgaagagct 12454
Query: 153 cgttttgtttctgaatcagatgtgtaactcgcataattgggaacattcaataagctgtta 212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12453 cgttttgtttctgaatcagatgtgtaactcgcataattgggaacattcaataagctgtta 12394
Query: 213 atcttcttggataaaagttggtttgtagttgtaggtttctcgatgttatttgatatagga 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12393 atcttcttggataaaagttggtttgtagttgtaggtttctcgatgttatttgatatagga 12334
Query: 273 gctgcgacctccttcgataaagagacggacgcagggcgtatttcaccgagggaaatgctg 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12333 gctgcgacctccttcgataaagagacggacgcagggcgtatttcaccgagggaaatgctg 12274
Query: 333 gcaaaatgtttcatcttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattc 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12273 gcaaaatgtttcatcttgctgtgaagatcggtaaactcggtgtcatgcttgctgacattc 12214
Query: 393 ggtagaacgaatttggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaaga 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12213 ggtagaacgaatttggcctcttgttcatcgtcattcaatctcaagcttgccaacgaaaga 12154
Query: 453 cgtgacgctggttgaggtaatgcagcagactcgtccactaccagtgccggataatctaga 512
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 12153 cgtgacgctggttgaggtaatgcagcagactcgtccactaccagtgccggaaaatctaga 12094
Query: 513 aagtccattacagatatgagatctgctatttataattgagtgcaatgattagttagtatg 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12093 aagtccattacagatatgagatctgctatttataattgagtgcaatgattagttagtatg 12034
Query: 573 tcagaatcctgatttcgcgagtagtttaatgtctcttt-atacaatttgtatgactttct 631
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 12033 tcagaatcctgatttcgcgagtagtttaatgtctctttaatacaatttgtatgactttct 11974
Query: 632 atttcgaaaaatgaaagatttaggttttttcgtattttattgaatcgggttatatattgg 691
|||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||
Sbjct: 11973 atttcgaaaaatgaaagatttagg-tttttcgta-tttattgaatcggtttatata-tgg 11917
Query: 692 natgggtgtaattggagtattggaccatttcaaaacctaaaccaaagtaaagattattat 751
||| |||||||| |||||||| | || |||||||| |||| ||||||||||||||||||
Sbjct: 11916 tatgtgtgtaatt-gagtattgta-caattcaaaacataaa-caaagtaaagattattat 11860
Query: 752 tgttngaat 760
|||| ||||
Sbjct: 11859 tgtttgaat 11851
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8017
Number of Sequences: 1807
Number of extensions: 8017
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)