BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE01FM1.SCF screened BAC_end
(970 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1037 0.0
>3x_Contig1782
Length = 24703
Score = 1037 bits (523), Expect = 0.0
Identities = 625/651 (96%), Gaps = 6/651 (0%)
Strand = Plus / Plus
Query: 87 catcatggaccctaccagggatcccaatttcaagtcccctcaggaactagacagtgaggc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12390 catcatggaccctaccagggatcccaatttcaagtcccctcaggaactagacagtgaggc 12449
Query: 147 acttcaatcaagcaccgatattccaaaaatcggtcctattatcccatatgtgctagctga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12450 acttcaatcaagcaccgatattccaaaaatcggtcctattatcccatatgtgctagctga 12509
Query: 207 ttacaatacagctatagataaaccgattcgtcctcgtaagtataagaaaaatgccattaa 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12510 ttacaatacagctatagataaaccgattcgtcctcgtaagtataagaaaaatgccattaa 12569
Query: 267 acggaaattggcttcttcgatgacttctaccagtgacgattccaacgaacagcagcatct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12570 acggaaattggcttcttcgatgacttctaccagtgacgattccaacgaacagcagcatct 12629
Query: 327 gtcagcaaattcgaacaatgggttcatcccgttgaaacagagggaactacagccggtgtc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12630 gtcagcaaattcgaacaatgggttcatcccgttgaaacagagggaactacagccggtgtc 12689
Query: 387 agctgaaacgagtggtgattctgaatctgaatctgaatctcctgcagaaccggcgaacgt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12690 agctgaaacgagtggtgattctgaatctgaatctgaatctcctgcagaaccggcgaacgt 12749
Query: 447 agatttggatatagatccaaatccagaatcggatgaagttatggcttcggctccagtggc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12750 agatttggatatagatccaaatccagaatcggatgaagttatggcttcggctccagtggc 12809
Query: 507 tcatgcatccggttcggtctctggtccatctggggatggcagccaactgctgcagctgct 566
||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||
Sbjct: 12810 tcatgcatccggttcggtctctggtccatct-gggatggcag-cagctgctgcagctgct 12867
Query: 567 gcatcccttgaccaagagattacttggagaattcacaagttcaaaatcgctgatttggaa 626
|||||||| |||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 12868 gcatccctcgaccaagagattacttcgagaattcacaagttccaaatcgctgatttggaa 12927
Query: 627 taaatgccttatgggattgggcggtagggccaacacctggaaggattattaattttccgg 686
|| ||||| ||||||||| || || |||||||| ||||||||||||| || || ||||
Sbjct: 12928 gaagtgcctcatgggattgtgc-gtcaggccaacaactggaaggattatcaa-ttcccgg 12985
Query: 687 ttattagacggaaacaaaaggtaaagaaacttcatattaattgcccttggt 737
| ||||| ||||| |||||| ||||||| ||| || |||||||||||||
Sbjct: 12986 ctcatagactgaaac-aaaggttaagaaac-tcaaataaattgcccttggt 13034
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5930
Number of Sequences: 1807
Number of extensions: 5930
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 970
length of database: 10,358,551
effective HSP length: 16
effective length of query: 954
effective length of database: 10,329,639
effective search space: 9854475606
effective search space used: 9854475606
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)