BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE02FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig717 1257 0.0
>3x_Contig717
Length = 3533
Score = 1257 bits (634), Expect = 0.0
Identities = 669/678 (98%), Gaps = 2/678 (0%)
Strand = Plus / Minus
Query: 86 aacttacaatccgcccatatgcaaagcaggaacgtgcttaggtggaccttcgcctgtttg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2982 aacttacaatccgcccatatgcaaagcaggaacgtgcttaggtggaccttcgcctgtttg 2923
Query: 146 ttctagcaattccctttttttgttcaatctattcgttatgtattcactcattcttacgtc 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2922 ttctagcaattccctttttttgttcaatctattcgttatgtattcactcattcttacgtc 2863
Query: 206 aacgttttcgtattttttcaaccatggatgttctaatagagcggcataagtgggtctacg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2862 aacgttttcgtattttttcaaccatggatgttctaatagagcggcataagtgggtctacg 2803
Query: 266 ttcagggattttttgcaaacacatggaaacaaagttttgagcatcggctgagaactttcc 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2802 ttcagggattttttgcaaacacatggaaacaaagttttgagcatcggctgagaactttcc 2743
Query: 326 ctctggaagtttaggaggtgggccgtcgacgatggcactcaactgtgagaatatgttgtc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2742 ctctggaagtttaggaggtgggccgtcgacgatggcactcaactgtgagaatatgttgtc 2683
Query: 386 aaacgtttctggcggatacggataagctcccaatgccatttccaatatcgatagacccaa 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2682 aaacgtttctggcggatacggataagctcccaatgccatttccaatatcgatagacccaa 2623
Query: 446 agaccagatatctgattggacagaatacgttgatttgtccggattcagtgatttgattct 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2622 agaccagatatctgattggacagaatacgttgatttgtccggattcagtgatttgattct 2563
Query: 506 ttctggggccatgtaagattgacaaccgatatttgtcttggctaaagaggcaacgaggtt 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2562 ttctggggccatgtaagattgacaaccgatatttgtcttggctaaagaggcaacgaggtt 2503
Query: 566 acctgacacaccataatcgcatagtttaattgtaccctggcttgcagaacacaagatatt 625
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2502 acctgacacaccaaaatcgcatagtttaattgtaccctggcttgcagaacacaagatatt 2443
Query: 626 agtttggtttaacatcacgatggatgatattatgcacgtctttcaattccttcaatcctt 685
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2442 ag-ttggtttaacatcacgatggatgatattatgcacgtctttcaattccttcaatcctt 2384
Query: 686 gtattactgagcttgttattcttgcttattgtggtttcgtcattcccccctatttggtca 745
||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||| |||
Sbjct: 2383 gtattactgagcttgttatccttgctagttgtgg-ttcgtcaatcccccctatttgttca 2325
Query: 746 tcatcataaggtttatct 763
|||||||||| |||||||
Sbjct: 2324 tcatcataagttttatct 2307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6522
Number of Sequences: 1807
Number of extensions: 6522
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)