BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE02RM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig352 636 0.0
3x_Contig1585 547 e-155
3x_Contig1475 539 e-153
>3x_Contig352
Length = 1459
Score = 636 bits (321), Expect = 0.0
Identities = 455/481 (94%), Gaps = 16/481 (3%)
Strand = Plus / Plus
Query: 455 gtaagatgccaacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 514
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 gtaagatgcccacttcttgagctatagacttggcagtaccagggaagtcacctgtcaaca 78
Query: 515 tatggacgttgataccagctaggtgacattttttaacagcagcaagcgattcgcgccttg 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tatggacgttgataccagctaggtgacattttttaacagcagcaagcgattcgcgccttg 138
Query: 575 gtggatcgtatataccgactaatcccaaaaatgttagattattttcgacaaagtcacgtt 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gtggatcgtatataccgactaatcccaaaaatgttagattattttcgacaaagtcacgtt 198
Query: 635 ccttcaatagtttgtccttggtgatagtaaattgtgattcgttaaaggttttcttggcaa 694
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ccttcaatagtttgtccttgttgatagtaaattgtgattcgttaaaggttttcttggcaa 258
Query: 695 aagctaacactcttagcccctcacttgattaggtatcaacattctttttgaaccagtttn 754
||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||
Sbjct: 259 aagctaacactcttagcccctcacttgataaggtatcaacattc-ttttgaa-cagtttc 316
Query: 755 cagatctttcttcggtcaaagggttgttggactgccatcangnagtggtataccangnat 814
|||||| |||||||||| |||||||| ||||||||||||| | |||||||||||| | |
Sbjct: 317 cagatc-ttcttcggtc-aagggttg-tggactgccatca-ggagtggtatacca-ggag 371
Query: 815 ttgcaacattggtaacactctctcaaaggcccccttggtgaacactttcgtaaattggga 874
|||||||||| ||| |||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 372 ttgcaacatt-gtagcactctctcaaaggcccccttggtgaacac-ttcgtaaatt-gga 428
Query: 875 gctttttggcctcttccacattccttatttataagcggacaattctctttcacgctagaa 934
|||||| | |||||||||||| ||||| ||| ||||||| |||||| ||||||||||||
Sbjct: 429 gctttt--ggctcttccacatt-cttatatat-agcggac-attctc-ttcacgctagaa 482
Query: 935 t 935
|
Sbjct: 483 t 483
>3x_Contig1585
Length = 11490
Score = 547 bits (276), Expect = e-155
Identities = 283/284 (99%), Gaps = 1/284 (0%)
Strand = Plus / Minus
Query: 52 gccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttcta 111
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttcta 233
Query: 112 ccttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcagac 171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ccttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcagac 173
Query: 172 gcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatcttc 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatcttc 113
Query: 232 aacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatgc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatgc 53
Query: 292 aaggcttcgatcatgcgtaccttagtttgtggtgcacaacgggc 335
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 52 aagg-ttcgatcatgcgtaccttagtttgtggtgcacaacgggc 10
>3x_Contig1475
Length = 10676
Score = 539 bits (272), Expect = e-153
Identities = 569/668 (85%)
Strand = Plus / Plus
Query: 52 gccacattttctgctaaaagttgtaggacgaatttctggatgttatcgctcattcttcta 111
|||||||| ||||| |||||||||| ||||||||| ||||| ||||| ||||||||||||
Sbjct: 8517 gccacattctctgccaaaagttgtaagacgaatttttggatattatcactcattcttcta 8576
Query: 112 ccttcttctacagcatttaaaatagaagcaaagttatcatcgctcaacacaatgtcagac 171
|||||||| ||||| || |||||||| ||||||||||| || ||||| || ||||||||
Sbjct: 8577 ccttcttcaacagcgttcaaaatagatgcaaagttatcgtcactcaaaacgatgtcagat 8636
Query: 172 gcatccttcgcaacgtcagaaccattgattcccatggcaataccaacattggcaatcttc 231
|||||||| ||||| ||||||||||| || ||||| ||||||||||| || ||||| |||
Sbjct: 8637 gcatccttggcaacatcagaaccattaatacccatagcaataccaacgttagcaattttc 8696
Query: 232 aacgatggtgaatcgttcacaccatctcctgtcatggcacagaacctgtttcgacgatgc 291
|| |||||||||||||| |||||||| |||||||||||||||||| || ||| ||||||
Sbjct: 8697 aatgatggtgaatcgttaacaccatcacctgtcatggcacagaacttgcttctacgatgt 8756
Query: 292 aaggcttcgatcatgcgtaccttagtttgtggtgcacaacgggcaataaccaagggcaaa 351
|| || || ||||| || ||||| || ||||| |||||||| ||||| || || ||||||
Sbjct: 8757 aatgcctcaatcatacggaccttggtctgtggggcacaacgagcaatgactaaaggcaaa 8816
Query: 352 actggtagctcatcgatttccttatcactcaaagcgtcgaaatcagttgctgtcataacc 411
|| ||| ||||| ||||| | |||||| ||||| |||||||||||||| | |||||||
Sbjct: 8817 acacgtaaatcatcaatttcttgatcacttaaagcatcgaaatcagttgcggccataacc 8876
Query: 412 ataaaattaacgacttcttttggataatgatataaattgtgaggtaagatgccaacttct 471
|| ||||| || ||||| ||||||||||| ||||| || ||||||||||| |||||||||
Sbjct: 8877 atgaaatttaccacttcctttggataatggtataagttatgaggtaagataccaacttct 8936
Query: 472 tgagctatagacttggcagtaccagggaagtcacctgtcaacatatggacgttgatacca 531
||||| || ||||||||||||||||||||||||||||| |||||||| || ||||| |||
Sbjct: 8937 tgagcaatggacttggcagtaccagggaagtcacctgttaacatatgcacattgattcca 8996
Query: 532 gctaggtgacattttttaacagcagcaagcgattcgcgccttggtggatcgtatataccg 591
||| | ||||||||||||||||| ||||| ||||| | ||||||||||| || ||||||
Sbjct: 8997 gcttgatgacattttttaacagcggcaagtgattcttgtcttggtggatcataaataccg 9056
Query: 592 actaatcccaaaaatgttagattattttcgacaaagtcacgttccttcaatagtttgtcc 651
| || || |||||||||| ||| |||||||||||||||||||||||||||||| |||
Sbjct: 9057 atcaaccctaaaaatgttaatttacattcgacaaagtcacgttccttcaatagtttatcc 9116
Query: 652 ttggtgatagtaaattgtgattcgttaaaggttttcttggcaaaagctaacactcttagc 711
||| || | |||| ||||||||||| ||||||| ||||| ||||||||||||| |
Sbjct: 9117 ttgttggcgttgaattccgattcgttaaaacttttcttagcaaaggctaacactcttaac 9176
Query: 712 ccctcact 719
|| |||||
Sbjct: 9177 ccttcact 9184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6017
Number of Sequences: 1807
Number of extensions: 6017
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 3
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)