BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE03FM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1417 1348 0.0
>3x_Contig1417
Length = 10492
Score = 1348 bits (680), Expect = 0.0
Identities = 776/802 (96%), Gaps = 5/802 (0%)
Strand = Plus / Minus
Query: 88 ttgtttcaaaccccaaaaaaacctcttctctgttcacttgacggtactattcggttataa 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1690 ttgtttcaaaccccaaaaaaacctcttctctgttcacttgacggtactattcggttataa 1631
Query: 148 gggaccgaaaagttctctgaatcaatgattttgctaatacggtgaatgtgctagcttcag 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gggaccgaaaagttctctgaatcaatgattttgctaatacggtgaatgtgctagcttcag 1571
Query: 208 caggaaatagaactgcttattctctttttagagccgtttgccactacatatatggattat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 caggaaatagaactgcttattctctttttagagccgtttgccactacatatatggattat 1511
Query: 268 ttcatttcgatatttgctgaagtgcataatttggtatattcaaaaccaaaaagcccagga 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 ttcatttcgatatttgctgaagtgcataatttggtatattcaaaaccaaaaagcccagga 1451
Query: 328 ttgcagatatcctgatcgaggtccgggtaagaaaccaatttacaacctgggacgtgaaag 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 ttgcagatatcctgatcgaggtccgggtaagaaaccaatttacaacctgggacgtgaaag 1391
Query: 388 tgaaaaacattacccggattattggtgtgagaaggtgttttgggcacgtgacttatcgtc 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 1390 tgaaaaacattacccggattattggtgtgagaaggtgttttgggcacgtgacttagcgtc 1331
Query: 448 tcatgttgaaacgacataatttcctctctggctgttaagcttagactattacttcaacta 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1330 tcatgttgaaacgacataatttcctctctggctgttaagcttagactattacttcaacta 1271
Query: 508 tacaatagataaaagagcaaaagatatctgggttggtaaaaacgactgcggagttacaac 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1270 tacaatagataaaagagcaaaagatatctgggttggtaaaaacgactgcggagttacaac 1211
Query: 568 tgtatagaacagtacggtctaatcattcgatacgtttctgaacccgagtcaacccatacg 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 1210 tgtatagaacagtacggtctaatcattcgatacgtttctgaacccgagtcaacccagacg 1151
Query: 628 tacaaattgaatgcngngacctattttgtgagctggattcactttagcatgatcacattc 687
|||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1150 tacaaattgaatgcggggacctatttggtgagctggattcactttagcatgatcacattc 1091
Query: 688 tttctacctc-atatgaaacaaaaagaaggtgtctcatgaatcatacctatagatcacac 746
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 tttctacctcaatatgaaacaaaaagaaggtgtctcatgaatcatacctatagatcacac 1031
Query: 747 gattcctggtcccttccttttctttcctttttgcgcctttggaagcttttgccctcgaat 806
|||||||||| ||||||||||||||||| | |||| ||| ||||||||||| ||||| ||
Sbjct: 1030 gattcctggt-ccttccttttctttcctctctgcg-cttcggaagcttttg-cctcggat 974
Query: 807 cttaagggaattttcttccttttttgttccatgcgaatcatgaaattttgctaaatg-aa 865
| ||||||||| | ||||| ||| ||| | |||||| |||||||| |||||||||| ||
Sbjct: 973 cataagggaatctccttccctttctgtacgatgcgatgcatgaaatattgctaaatgaaa 914
Query: 866 ccctcatcccgatctttttttc 887
|| |||||| ||||||||||||
Sbjct: 913 ccatcatccggatctttttttc 892
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6915
Number of Sequences: 1807
Number of extensions: 6915
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)