BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE03RM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1771 1324 0.0
>3x_Contig1771
Length = 25932
Score = 1324 bits (668), Expect = 0.0
Identities = 778/810 (96%), Gaps = 4/810 (0%)
Strand = Plus / Minus
Query: 47 ctattctatcgtttagcattctttctgtcgaaaccgttatttgtgtttacctattgagtg 106
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9573 ctattctagcgtttagcattctttctgtcgaaaccgttatttgtgtttacctattgagtg 9514
Query: 107 ctcaagaaactgagaaagagagatatcagagtttactatttgatctttacgccctgacat 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9513 ctcaagaaactgagaaagagagatatcagagtttactatttgatctttacgccctgacat 9454
Query: 167 ttagggttttagtttcctttccattatacttacagattttaccaatccgaatacacaatc 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9453 ttagggttttagtttcctttccattatacttacagattttaccaatccgaatacacaatc 9394
Query: 227 tatttaagcaaaatatgacagacgggcttttagttactggtgacctggttctttgcaccg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9393 tatttaagcaaaatatgacagacgggcttttagttactggtgacctggttctttgcaccg 9334
Query: 287 tgggcagttacgaaccatggccagctgtagttgttcctcaacggatattgagtaagagtg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9333 tgggcagttacgaaccatggccagctgtagttgttcctcaacggatattgagtaagagtg 9274
Query: 347 tgctgaaggcgaaggagaacgttggtcaagttgctgtggcattttttaacgattctacct 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9273 tgctgaaggcgaaggagaacgttggtcaagttgctgtggcattttttaacgattctacct 9214
Query: 407 attattggactaaaccaaaacagttaaaacttcttactgaggaaaatatagaagcgtgga 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9213 attattggactaaaccaaaacagttaaaacttcttactgaggaaaatatagaagcgtgga 9154
Query: 467 taaaatcgccgcccaaaaggtcttcgaaagagttgaagaaagcttaccagtttgcatccg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9153 taaaatcgccgcccaaaaggtcttcgaaagagttgaagaaagcttaccagtttgcatccg 9094
Query: 527 actatacgagtttgcaagagtttgtcgaagacaggttgacagcggagggaagagcggatg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9093 actatacgagtttgcaagagtttgtcgaagacaggttgacagcggagggaagagcggatg 9034
Query: 587 atttggaaactatcgctgaagttaagatgggagaggacccattacttttccatattgagt 646
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 9033 atttggaaactatcgctgaagttaagatgggagaggacccattactttccaatattgagt 8974
Query: 647 ttaaactggaagacactaaatctacggataatagacggggcagaagaag-aatgaaagcg 705
| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 8973 taaaactggaagacactaaatctacggataaaagacggggcagaagaagaaatgaaagcg 8914
Query: 706 attcanaagattctacctnc-ataattacagttacggaagttccaaagcttaaaagttgg 764
| ||| | |||||||||| | ||||| ||||| |||||||| |||||||| |||||| |
Sbjct: 8913 aatcagaggattctacctccaataataacagtaacggaagtaccaaagctaaaaagtcgc 8854
Query: 765 ccagtagtgggaaacaaaatagagacttcccgggtatttcaaccggtcgcaacatctgtt 824
|||||||||| || ||||||||||| || | ||||| | ||| |||||||||||||||
Sbjct: 8853 ccagtagtggaaacaaaaatagagac-tcaccggtatctacacctgtcgcaacatctgtt 8795
Query: 825 ttagattttcaggaagaagaagggaagctc 854
| ||| ||||| |||||||| || ||||||
Sbjct: 8794 tcaga-tttcaagaagaagagggaaagctc 8766
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7141
Number of Sequences: 1807
Number of extensions: 7141
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)