BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE04FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1213 0.0
>3x_Contig1765
Length = 24733
Score = 1213 bits (612), Expect = 0.0
Identities = 712/731 (97%), Gaps = 11/731 (1%)
Strand = Plus / Plus
Query: 87 agatgtgatcatgaacaagcaacctgaacattccaaattttataacgagattttgaatca 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10975 agatgtgatcatgaacaagcaacctgaacattccaaattttataacgagattttgaatca 11034
Query: 147 atgggaacatgatgggttcaaatacggagatgatttgtccgtggtcgtcagtcagtacac 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11035 atgggaacatgatgggttcaaatacggagatgatttgtccgtggtcgtcagtcagtacac 11094
Query: 207 tttttcatgttgggatccaacgaaaccccatttcagattggtgcttttgccttcggcaga 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11095 tttttcatgttgggatccaacgaaaccccatttcagattggtgcttttgccttcggcaga 11154
Query: 267 tgataagaagggagcgaggggattcaaggatattctttacatcacgaaccatgttacaag 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11155 tgataagaagggagcgaggggattcaaggatattctttacatcacgaaccatgttacaag 11214
Query: 327 tgatggtacttccggagctaatttattggaagacttatcgatcgaattgggtaaattttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11215 tgatggtacttccggagctaatttattggaagacttatcgatcgaattgggtaaattttc 11274
Query: 387 tggaaccaatttgcaacagttagagtatcttttacattatggaagagactacgagcaatt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11275 tggaaccaatttgcaacagttagagtatcttttacattatggaagagactacgagcaatt 11334
Query: 447 gccgaagttaccagacccaatcgaagaaaaagtatcttatggtgtcaatccatcgtttat 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11335 gccgaagttaccagacccaatcgaagaaaaagtatcttatggtgtcaatccatcgtttat 11394
Query: 507 tgcatctttcctcttgagtcaaatgggaaagaaattgttgaccaagatatgggaccaacc 566
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11395 tgcatctttcctcttgagtcaaatgggaaagaaattgttgaccaagaaatgggaccaacc 11454
Query: 567 catcactcgtnctatcgatgcgtcacccgctagtcacatggctcacattatcaagattga 626
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11455 catcactcgtcctatcgatgcgtcacccgctagtcacatggctcacattatcaagattga 11514
Query: 627 ccc-acaggtatgcagaagatgagagctagagtgaaggacaaggttgatgggtaaagcta 685
||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 11515 cccaacaggtatgcagaagatgagagctagagtgaaggacaa-gttgaatggtaaagcta 11573
Query: 686 cgtt-acgccctttatgccagcgtgctggtttgttagttgctatgaa-ctgggttgtttg 743
|||| |||||||| |||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 11574 cgttaacgcccttcatgcaagcgtgctggtttgttagttgctatgaagctgggttgtttg 11633
Query: 744 ac-at-gaaaat-gaacgaa-ttttcat-tacatggcagttcctatg-acacta-acaat 796
|| || |||||| ||||||| ||||||| ||||||||||||||||| |||||| |||||
Sbjct: 11634 acgatagaaaatggaacgaatttttcatcaacatggcagttcctatgaacactagacaat 11693
Query: 797 ttctacctgaa 807
||||||||||
Sbjct: 11694 atctacctgaa 11704
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6761
Number of Sequences: 1807
Number of extensions: 6761
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)