BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE04RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1321 1269 0.0
>3x_Contig1321
Length = 8217
Score = 1269 bits (640), Expect = 0.0
Identities = 722/745 (96%), Gaps = 4/745 (0%)
Strand = Plus / Plus
Query: 49 aacatggaaaatttcttttgaggaaaaacatatcgtcaagttagggtaaccactggttgt 108
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3719 aacatggaaaatttcttttgaggaaaaacatatcgtcaagttacggtaaccactggttgt 3778
Query: 109 caacatggaaactagttcggaatctctaagcaacatattaaatccaagatgagttgtgat 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3779 caacatggaaactagttcggaatctctaagcaacatattaaatccaagatgagttgtgat 3838
Query: 169 tgagacatgatttgagagacttgaaaataaagacagaattgagtagttagtcctctttcg 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3839 tgagacatgatttgagagacttgaaaataaagacagaattgagtagttagtcctctttcg 3898
Query: 229 ttacttattgcattcctcctataatattcggtgaattcttttggttgttcgcaccagtta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3899 ttacttattgcattcctcctataatattcggtgaattcttttggttgttcgcaccagtta 3958
Query: 289 tatttgatagaattgaactgtaccaagtgcagttttagaaaggcgaccgattagagacat 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3959 tatttgatagaattgaactgtaccaagtgcagttttagaaaggcgaccgattagagacat 4018
Query: 349 ttcaaccaatcagggagatggcttcgcttagacgatacatgcgtgttccgagagaactat 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4019 ttcaaccaatcagggagatggcttcgcttagacgatacatgcgtgttccgagagaactat 4078
Query: 409 tacccactgaaatcttcaaacaagagtctcagtcccctggtaaaataatcgttcagatta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4079 tacccactgaaatcttcaaacaagagtctcagtcccctggtaaaataatcgttcagatta 4138
Query: 469 tactcttgcaaatgttctattatctcactgcatcaactttgttttattgctgggcgaaaa 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4139 tactcttgcaaatgttctattatctcactgcatcaactttgttttattgctgggcgaaaa 4198
Query: 529 tatgtgggtacgaaataaagctaaagcaatggttgtttacatggcangacattgatttct 588
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4199 tatgtgggtacgaaataaagctaaagcaatggttgtttacatggcaggacattgatttct 4258
Query: 589 canactcttttggtatttctttatcagccctttgggttaatgattccttgatttgngtc- 647
|| |||||||||||||||||||||||||||||||| | | ||||||||||||||| |||
Sbjct: 4259 caaactcttttggtatttctttatcagccctttggttaattgattccttgatttgtgtct 4318
Query: 648 tttttttgaccatcatagtggggaagagtaaactcgcgtgggattttgccatttacatcc 707
|||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||
Sbjct: 4319 tttttttgaccatcatagtgggaaggagtaaactcgcgtgggattttgccattacaatcc 4378
Query: 708 atgctattaatctagtagtagtattaacacacccagggctatttcccttcacttagcttg 767
||||||| |||||||||||||||| |||||| |||||||| |||||||||| |||| ||
Sbjct: 4379 atgctataaatctagtagtagtatggacacacacagggcta-ttcccttcac-tagcatg 4436
Query: 768 gtttattctggcattttttgtctac 792
||||| ||| ||| |||||||||||
Sbjct: 4437 gttta-tcttgcaatttttgtctac 4460
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6808
Number of Sequences: 1807
Number of extensions: 6808
Number of successful extensions: 64
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)