BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE05RM1.SCF screened BAC_end
(937 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig257 940 0.0
>3x_Contig257
Length = 1630
Score = 940 bits (474), Expect = 0.0
Identities = 584/611 (95%), Gaps = 9/611 (1%)
Strand = Plus / Minus
Query: 320 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1630 gagtttatgagttccgcagttcttgaggaagaaatatgggaacactattcgcaacaatag 1571
Query: 380 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1570 aggtattgtaccattagctttaaaagtgaaaaggtatagagggaatccgataatttgaag 1511
Query: 440 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1510 ctgtttttcggtcgagattgaaagcatgccctttaaagtttctgcatacacatctaacgc 1451
Query: 500 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1450 tttagtattggatatatttagaatctttcttagcagttcttctgaaaacagagtgcgtag 1391
Query: 560 ttgccaaagcccaactttgaatagacacttcaccggattgaagacataactgtgtaaagt 619
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1390 ttgccaaagcccaactttgaatagacacttcaccggattgaagacataactgtgtaaagt 1331
Query: 620 aagtacagtagcagaatatcttgttacttttcgancaaag-aaaacaatctcaagggcca 678
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct: 1330 aagtacagtagcagaatatcttgttacttttcgacaaaaggaaaacaatctcaagggcca 1271
Query: 679 agccggtgatctgtatctgta-cgctgatgtattttntaacatcttttgtttacattgtg 737
||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 1270 agccggtgatctgta-ctgtaacgctgatgtattttttaacatcttttgtttacattgtg 1212
Query: 738 ggcatggtggtatgtcttctgggagtcctctccatagttcgtcatacgagaaaagagtat 797
|||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||
Sbjct: 1211 ggcatggtggtatgtcttctggaagtcctctccatagttcgtcatacgagaaagaagtat 1152
Query: 798 tctggagcatttatatgggctatggccctgatccaaagatcaccaacccaaattaaactt 857
|||||||||||| |||||||| |||||||||| ||||||||||||| ||||| |||||
Sbjct: 1151 -ctggagcatttagatgggctagggccctgatcaaaagatcaccaacacaaataaaactg 1093
Query: 858 gcccatgtttttgacc-actatcggtattcttctgcaccaatttcaccaaacccaatttc 916
|||||||||| |||| |||| |||||| || |||||| | ||||| ||||||||||| |
Sbjct: 1092 gcccatgttt--gacccactaacggtat-ctcctgcac-agtttcagcaaacccaattac 1037
Query: 917 tcttcccatgt 927
||| |||||||
Sbjct: 1036 tctccccatgt 1026
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6538
Number of Sequences: 1807
Number of extensions: 6538
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 937
length of database: 10,358,551
effective HSP length: 16
effective length of query: 921
effective length of database: 10,329,639
effective search space: 9513597519
effective search space used: 9513597519
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)