BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE06FM1.SCF screened BAC_end
(910 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1255 1251 0.0
3x_Contig1806 351 2e-96
3x_Contig883 101 2e-21
>3x_Contig1255
Length = 5009
Score = 1251 bits (631), Expect = 0.0
Identities = 701/719 (97%), Gaps = 5/719 (0%)
Strand = Plus / Minus
Query: 88 agctgccatcaaaaactgacagaatgcgataagggtcatgatagcaatagtccacttttt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 agctgccatcaaaaactgacagaatgcgataagggtcatgatagcaatagtccacttttt 1320
Query: 148 acccaaggcatcgaataagacttgcgctagtggttggtgaaatttagtatttacaagtgc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 acccaaggcatcgaataagacttgcgctagtggttggtgaaatttagtatttacaagtgc 1260
Query: 208 agctacgtcttgcgaggagcaggcagcaatgacaatacaaataaagaaacccaaaaacca 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 agctacgtcttgcgaggagcaggcagcaatgacaatacaaataaagaaacccaaaaacca 1200
Query: 268 acatacactgatagatcctatgataccgaatgggaccgaagctgtggcatttttggcctc 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1199 acatacactgatagatcctatgataccgaatgggaccgaagctgtggcatttttggcctc 1140
Query: 328 ttcagacatatgaagacaagaatcaaatccgccaataacccaaatgagtggttggaaacc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1139 ttcagacatatgaagacaagaatcaaatccgccaataacccaaatgagtggttggaaacc 1080
Query: 388 agctaacatgaattgccagccattgttccaatctgacaaattctcgaaatcaccaaaaat 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1079 agctaacatgaattgccagccattgttccaatctgacaaattctcgaaatcaccaaaaat 1020
Query: 448 atatgcggcatcattaaattccatgtcttttgatctagcgacaccaacaggaagaacaac 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1019 atatgcggcatcattaaattccatgtcttttgatctagcgacaccaacaggaagaacaac 960
Query: 508 gaaaaagatgcatatcaatagtagattggatacaatagagatcgtttgcaacctatagac 567
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 959 gaaaaagatgcatatcaatagtagattggatacaatagagaacgtttgcaacctagagac 900
Query: 568 tgcagtggtagcaactgaagtaacaacagccgtagcaatgatacatgctgcataaacacc 627
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 899 tgcagtggtagcaactgaagtaacaacagccgtagcaatgatacaggctgcataaacacc 840
Query: 628 gtatgtgtttgcatttgtgatgttgaaattaccattgctaccgacaanncacatagataa 687
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 839 gtatgtgtttgcatttgtgatgttgaaattaccattgctaccgacaacaacaatagataa 780
Query: 688 tatttctnctgctaaa-catagttgattgaac-aagacaagaaatc-atgctagggag-t 743
||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct: 779 tatttctcctgctaaaccatagttgattgaacaaagacaagaaatcaatgctagggagtt 720
Query: 744 acagttcccgacaataaggaataaaaaa-nctttacctttggaggagcgtagtaatgtg 801
||||||||||||||||| | |||||||| ||| |||||||||||||||||||||||||
Sbjct: 719 acagttcccgacaataaaggataaaaaattcttaacctttggaggagcgtagtaatgtg 661
>3x_Contig1806
Length = 53694
Score = 351 bits (177), Expect = 2e-96
Identities = 474/573 (82%)
Strand = Plus / Plus
Query: 88 agctgccatcaaaaactgacagaatgcgataagggtcatgatagcaatagtccacttttt 147
||||||||||||||| || ||||| || |||||| |||||||||||| ||||| ||||
Sbjct: 42898 agctgccatcaaaaattggcagaaggcaataaggaccatgatagcaatggtccatctttt 42957
Query: 148 acccaaggcatcgaataagacttgcgctagtggttggtgaaatttagtatttacaagtgc 207
|| ||||| || |||| | ||| || | ||||||||||||||||| | ||||| ||
Sbjct: 42958 gcctaaggcgtcaaatagaatttgagccaaaggttggtgaaatttagtttctacaatagc 43017
Query: 208 agctacgtcttgcgaggagcaggcagcaatgacaatacaaataaagaaacccaaaaacca 267
||| |||||||| ||||||||||||||||| |||||||| |||||||| ||||||| |||
Sbjct: 43018 agcgacgtcttgtgaggagcaggcagcaataacaatacatataaagaagcccaaaaccca 43077
Query: 268 acatacactgatagatcctatgataccgaatgggaccgaagctgtggcatttttggcctc 327
|||||||||||| ||||| |||||||||||||| || |||||||||||||||||||| ||
Sbjct: 43078 acatacactgatggatccaatgataccgaatggaactgaagctgtggcatttttggcttc 43137
Query: 328 ttcagacatatgaagacaagaatcaaatccgccaataacccaaatgagtggttggaaacc 387
|| |||||||||| ||| || ||||| || |||||||||||||| || |||||||| ||
Sbjct: 43138 ctcggacatatgaatacaggagtcaaaaccaccaataacccaaataagcggttggaagcc 43197
Query: 388 agctaacatgaattgccagccattgttccaatctgacaaattctcgaaatcaccaaaaat 447
|||| ||||||||||||| |||| ||||| || ||||| || | ||| | |||||| ||
Sbjct: 43198 agctgacatgaattgccatccatcattccagtccgacaagttttggaagttaccaaatat 43257
Query: 448 atatgcggcatcattaaattccatgtcttttgatctagcgacaccaacaggaagaacaac 507
|||| || ||||| |||||||||| || ||||| ||||||||||| ||||| ||||
Sbjct: 43258 atatttagcgtcattgaattccatgtggttcgatctggcgacaccaactggaagggcaac 43317
Query: 508 gaaaaagatgcatatcaatagtagattggatacaatagagatcgtttgcaacctatagac 567
||| || ||||| ||||| |||| |||||| ||||| |||| ||||||||| | ||||
Sbjct: 43318 gaagaaaatgcaaatcaacagtaaattggacacaatggagaatgtttgcaactttgagac 43377
Query: 568 tgcagtggtagcaactgaagtaacaacagccgtagcaatgatacatgctgcataaacacc 627
|||| || ||||| ||||| ||||| || ||||| | |||||||| || || |||||
Sbjct: 43378 tgcaacagtggcaacggaagtgacaaccgcagtagctacaatacatgccgcgtagacacc 43437
Query: 628 gtatgtgtttgcatttgtgatgttgaaattacc 660
|||||| |||| ||||||||||| ||||||||
Sbjct: 43438 atatgtgcttgcgtttgtgatgttaaaattacc 43470
>3x_Contig883
Length = 3346
Score = 101 bits (51), Expect = 2e-21
Identities = 93/102 (91%), Gaps = 4/102 (3%)
Strand = Plus / Minus
Query: 704 catagttgattgaacaa-gacaagaaatca-tgctagggagt-acagttcccgacaataa 760
||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 3343 catagttgattgaacaaagacaagaaatcaatgctagggagttacagttcccgacaataa 3284
Query: 761 ggaataaaaaan-ctttacctttggaggagcgtagtaatgtg 801
| |||||| | ||| |||||||||||||||||||||||||
Sbjct: 3283 aggataaaatattcttaacctttggaggagcgtagtaatgtg 3242
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5700
Number of Sequences: 1807
Number of extensions: 5700
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 3
length of query: 910
length of database: 10,358,551
effective HSP length: 16
effective length of query: 894
effective length of database: 10,329,639
effective search space: 9234697266
effective search space used: 9234697266
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)