BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE06RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1746 1049 0.0
>3x_Contig1746
Length = 26672
Score = 1049 bits (529), Expect = 0.0
Identities = 600/620 (96%), Gaps = 3/620 (0%)
Strand = Plus / Plus
Query: 49 agcaaaaacgtccaccaattccgaatgcatacgaagtccagccagattacagcgcttata 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 17959 agcaaaaacgtccaccaagtccgaatgcatacgaagtccagccagattacagcgcttata 18018
Query: 109 gagataagaacagaaaagacgctcaatgatttatgaatttgatcagcatactctttcact 168
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 18019 gagataagaacagaaaagacgctcaatgatttaggaatttgatcagcatactctttcact 18078
Query: 169 tcttgtacatttcgttgcatcttctactcactacaacaatgcactgctgaaaaggtaatt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18079 tcttgtacatttcgttgcatcttctactcactacaacaatgcactgctgaaaaggtaatt 18138
Query: 229 ggcagttcaaatgtatatatatacatatgcatatataatctatcaggcaattatatcgaa 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18139 ggcagttcaaatgtatatatatacatatgcatatataatctatcaggcaattatatcgaa 18198
Query: 289 taacaatcgacttacacatggttattttattgtatgctattatggtaggacgtctgggtt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18199 taacaatcgacttacacatggttattttattgtatgctattatggtaggacgtctgggtt 18258
Query: 349 ctgacataactcaagtgctcataaatgagagctctgctacaaaccaacttctatattgat 408
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18259 ctgacataactcaggtgctcataaatgagagctctgctacaaaccaacttctatattgat 18318
Query: 409 taatatgctgtaagtttctcttggcattttgtattgaatcataccagcataaatcataca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18319 taatatgctgtaagtttctcttggcattttgtattgaatcataccagcataaatcataca 18378
Query: 469 atttttagcaacacgtttgagagaatcganttgctgctttttagtcaaagattggtaatc 528
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 18379 atttttagcaacacgtttgagagaatcgatttgctgctttttagtcaaagattggtaatc 18438
Query: 529 actttcgttcaactgctttatgatgttagaaatgcatagcatttgtattatcaacaggtt 588
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 18439 actttcgttcaactgctttatgatgttagaaatgcatagcattgtaattatcaacaggtt 18498
Query: 589 aagaatgttctttaat-tattct-atccaaatgtgtaatttc-tgtggcttttttcctgt 645
| | |||||||||||| |||||| |||||||||||||| ||| |||| |||||| ||
Sbjct: 18499 aggtatgttctttaatatattctcatccaaatgtgtaaattcttgtgctctttttctggt 18558
Query: 646 caagctttcatccgggaacg 665
| |||||||||||| |||||
Sbjct: 18559 cgagctttcatccgtgaacg 18578
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7097
Number of Sequences: 1807
Number of extensions: 7097
Number of successful extensions: 95
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)