BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE07FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1068 841 0.0
>3x_Contig1068
Length = 5568
Score = 841 bits (424), Expect = 0.0
Identities = 433/435 (99%), Gaps = 1/435 (0%)
Strand = Plus / Minus
Query: 87 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 376
Query: 147 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 316
Query: 207 cttaaatattatttcctcaagcaacaagacgtatatttactacttccagaacacagttgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttaaatattatttcctcaagcaacaagacgtatatttactacttccagaacacagttgt 256
Query: 267 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattga 196
Query: 327 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgagg 136
Query: 387 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 ggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattct 76
Query: 447 tttgatccttcaaaagat-aaaaaacacacaaatcaagatgtanttgaaccatcacaact 505
|||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 75 tttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaact 16
Query: 506 gaacgtattcagaga 520
|||||||||||||||
Sbjct: 15 gaacgtattcagaga 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7464
Number of Sequences: 1807
Number of extensions: 7464
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)