BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE07RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1252 932 0.0
>3x_Contig1252
Length = 5616
Score = 932 bits (470), Expect = 0.0
Identities = 531/545 (97%), Gaps = 5/545 (0%)
Strand = Plus / Plus
Query: 43 gcttaaaaatgtaaatagtaaatagataaatggatgcacgttatatcaaggggcgcgctt 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1068 gcttaaaaatgtaaatagtaaatagataaatggatgcacgttatatcaaggggcgcgctt 1127
Query: 103 cttgtttttgctctgttaatagtgttcattttaggtttgaatgactagcaagccaagacc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1128 cttgtttttgctctgttaatagtgttcattttaggtttgaatgactagcaagccaagacc 1187
Query: 163 agaaagaagcaggtattctttttagcgagtccatttaagatgggcgaatcagtgcgatgt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1188 agaaagaagcaggtattctttttagcgagtccatttaagatgggcgaatcagtgcgatgt 1247
Query: 223 ctgcgtgattttttggttcactttgctcatttctgcaggtacagatacaatgatatgtgt 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1248 ctgcgtgattttttggttcactttgctcatttctgcaggtacagatacaatgatatgtgt 1307
Query: 283 tcgttttacctttggaaggttctactcacctgtatgaaccattgtaatgaggaaataaac 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1308 tcgttttacctttggaaggttctactcacctgtatgaaccattgtaatgaggaaataaac 1367
Query: 343 tgggaagatcttactcatgtttttgggttaaatcaagtgggaaatgggcgattttgggaa 402
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1368 tgggaagatcttactcatgtttttgggttaaatc-agtgggaaatgggcgattttgggaa 1426
Query: 403 gatcanattgagatctaactggcgtgagtcactcataccg-aaaggaaacattacgatca 461
||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1427 gatcaaattgagatctaactggcgtgagtcactcataccgaaaaggaaacataacgatca 1486
Query: 462 tcgagggtcgcagtgttcgaaacagtgccatggcactgagaccgtttactactgctttga 521
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1487 tcgaggttcgcagtgttcgaaacagtgccatggcactgagaccgtttactactgctttga 1546
Query: 522 ttgtacaaaaattccg-tggatg-aatttgggaaaattg-tttgatgaaagtcagcccat 578
||||||||||| |||| || ||| |||||| ||| |||| |||||||| ||||||| |||
Sbjct: 1547 ttgtacaaaaaatccgttgtatgaaatttgtgaagattgttttgatgagagtcagcacat 1606
Query: 579 aggcc 583
|||||
Sbjct: 1607 aggcc 1611
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6773
Number of Sequences: 1807
Number of extensions: 6773
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)