BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE08FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1769 1239 0.0
>3x_Contig1769
Length = 25795
Score = 1239 bits (625), Expect = 0.0
Identities = 718/741 (96%), Gaps = 6/741 (0%)
Strand = Plus / Plus
Query: 90 atattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaactctttag 149
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13407 atattgcttttcatgctacattagccactaatgtgaaaagataacatcgaaactctttag 13466
Query: 150 attacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccacgacgaa 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13467 attacctttaaatgcctctcttcgtggaagtcggtccaatatcaccaagaccacgacgaa 13526
Query: 210 tagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagccagaca 269
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13527 tagaggcgcaggagacattcttccatctgtcaaaagaagtgaatatgctgcagccagaca 13586
Query: 270 accaataacacagcattacataagagaagaggtactttttctatcaccgactggaattta 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13587 accaataacacagcattacataagagaagaggtactttttctatcaccgactggaattta 13646
Query: 330 aaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactcttgctttt 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13647 aaagccgtccggaaaatcccattcttagattggacaatctgatgtttaactcttgctttt 13706
Query: 390 tttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaagtttca 449
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13707 tttctctcccttagcagctcttgctaggaagcaattatcttgtgcaggcttaaagtttca 13766
Query: 450 tggagaaccctattgacctggacctgtgcattgtatttctaatcgctacgcgttctgtgc 509
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 13767 tggagaaccctattgacctggacctgtgcattgtatttctaaagtctacgcgttctgtgc 13826
Query: 510 agttatactgagacatcaaatatggctgtgaagaatgagttccaataaagttatttttgg 569
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 13827 agttatactgagacatcaaatatggctgtgaagaaggagttccaataaagttatttttgg 13886
Query: 570 attagctaatgtcagggacataggaaatgaatgcagctctcccttgcaccagagaatggt 629
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 13887 attagctaatgtcagggacaaaggaaatgaatgcagctctcccttgcaccagagaatggt 13946
Query: 630 ctatgggagtgcaatcttccgtcgttcattgacaccagctcggttcgtacagaaagataa 689
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 13947 ctatgggagtgcaatcttccgtcgtccattgacaccagctcggttcgtacagaaagataa 14006
Query: 690 tatttacctgccgaaaaaaacagaccaagcagtcttgttgctggcgtgtagcctccccat 749
||||||||||||||||||||||||||| |||||| || |||||||||| || |||||||
Sbjct: 14007 tatttacctgccgaaaaaaacagaccaggcagtc-tggtgctggcgtg-aggctccccag 14064
Query: 750 aaagtcctaggccca-acagccaaaacgacttttttgatcacttttattacgaaaagggc 808
|| || ||||||||| |||||||||||||||| || |||||| |||| |||| | |||||
Sbjct: 14065 aaggt-ctaggcccacacagccaaaacgacttcttcgatcac-tttagtacg-agagggc 14121
Query: 809 aggccccatttccattagttt 829
|||||||| | ||||||||||
Sbjct: 14122 aggccccagtcccattagttt 14142
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5069
Number of Sequences: 1807
Number of extensions: 5069
Number of successful extensions: 38
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)