BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE08RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1166 1029 0.0
>3x_Contig1166
Length = 5040
Score = 1029 bits (519), Expect = 0.0
Identities = 625/650 (96%), Gaps = 8/650 (1%)
Strand = Plus / Minus
Query: 41 gctttacat-aggtttgggtggaaaaacatactagtcaattggaaagaatatacaaaaag 99
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1820 gctttacatcaggtttgggtggaaaaacatactagtcaattggaaagaatatacaaaaag 1761
Query: 100 aaagttttacagttaagctctgattgcataaaaattgatgagaacattgatacctttgct 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1760 aaagttttacagttaagctctgattgcataaaaattgatgagaacattgatacctttgct 1701
Query: 160 gttgtaaaacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctatctta 219
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 1700 gttgtaaaacataaactaccgaaaagtgtcaaactttcccccgaaaaaaaccctaacaaa 1641
Query: 220 cgattgaaacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagc 279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1640 cgattgaaacttttttcaaacaatatttaatgtgacgctgctattaaaaagttggtcagc 1581
Query: 280 tttgaatctgtttgtttatatatacataaagtgccattggtgaagatactctctttgtta 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1580 tttgaatctgtttgtttatatatacataaagtgccattggtgaagatactctctttgtta 1521
Query: 340 cacgctcttttcgtgtcatagtgttttgtttctttgatttatccgtccaatattttctat 399
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1520 cacgctcttttcgtgtcatagtgttttgtttc-ttgatttatccgtccaatattttctat 1462
Query: 400 gctcatcgctttcatttttttttgtttttctctcatatatcaaatacagttggcaatac- 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1461 gctcatcgctttcatttttttttgtttttctctcatatatcaaatacagttggcaataca 1402
Query: 459 aaaaaaattaacttaagacgacatccaaagnattaaagcactttccagttatgctttttg 518
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 1401 aaaaaaattaacttaagacgacatccaaagaattaaggcactttccagttatgctttttg 1342
Query: 519 tattgcactgagccgctctttggtttctttcactgccatcttcactaacattcgacttat 578
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 1341 tattgcactgagccgctctttgtttcttttcactgccatcttcactaacattcgacttat 1282
Query: 579 tttttacacaattgttaaccctcagccagcaaaacatttcctgtttaacaaattttgttg 638
||||||||||||||| | |||||||||||||||||| || ||||||| |||| |||||||
Sbjct: 1281 tttttacacaattgtaagccctcagccagcaaaaca-ttactgtttaccaaa-tttgttg 1224
Query: 639 ggtggaggttttggcatttggcgtcatggattaagggaaaatcaataagc 688
|| ||||||| |||||| ||||||| || ||||| |||||||||||||
Sbjct: 1223 tgt-gaggtttgtgcattt-gcgtcat-gaataaggtaaaatcaataagc 1177
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 20,189
Number of Sequences: 1807
Number of extensions: 20189
Number of successful extensions: 211
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)