BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZE09FM1.SCF screened BAC_end
         (895 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1677                                                        1207   0.0  

>3x_Contig1677 
          Length = 15081

 Score = 1207 bits (609), Expect = 0.0
 Identities = 711/743 (95%), Gaps = 2/743 (0%)
 Strand = Plus / Plus

                                                                        
Query: 84   ttatccagttagttttatctttaagttcaggaacaagtccatagtccaactgactcttga 143
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1982 ttatccagttagttttatctttaagttcaggaacaagtccatagtccaactgactcttga 2041

                                                                        
Query: 144  gatcttctatcgcttcatcttgctctcttaacttcctattcaactcgcttataatgaact 203
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2042 gatcttctatcgcttcatcttgctctcttaacttcctattcaactcgcttataatgaact 2101

                                                                        
Query: 204  catgtttagtattatcaattacttctggatttttcttctcttgtgacaaaaagaactgga 263
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 2102 catgtttagtattatcaattacttctcgatttttcttctcttgtgacaaaaagaactgga 2161

                                                                        
Query: 264  attcatgttccaaaaaggtatacttatccttccattcctgcagctcccgcttcaacgctt 323
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2162 attcatgttccaaaaaggtatacttatccttccattcctgcagctcccgcttcaacgctt 2221

                                                                        
Query: 324  taatttgttcagctggtaacacttgctctaaatcattggaagatcttctataactaccaa 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2222 taatttgttcagctggtaacacttgctctaaatcattggaagatcttctataactaccaa 2281

                                                                        
Query: 384  acaatgatgccccgcgtcttgttggtgtaagaatatcagattgcatcgcaatttgcaccg 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2282 acaatgatgccccgcgtcttgttggtgtaagaatatcagattgcatcgcaatttgcaccg 2341

                                                                        
Query: 444  ctgtgtcgaaagatgttccaacgagcatcgaanaagcctctaaaaactgttctttcgaca 503
            ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 2342 ctgtgtcgaaagaggttccaacgagcatcgaaaaagcctctaaaaactgttctttcgaca 2401

                                                                        
Query: 504  acgttttcattggatcgttattgacccatgattctatcaccttgtcattggattgggtgg 563
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2402 acgttttcattggatcgttattgacccatgattctatcaccttgtcattggattgggtgg 2461

                                                                        
Query: 564  tcaacttcgatggcaattctctgtcaatgaaaagaattatctncgggatatccttcgcat 623
            ||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||
Sbjct: 2462 tcaacttcgatggcaattctctgtcaatgaaagaaattatctccgggatatccttcgcat 2521

                                                                        
Query: 624  a-acatatccatcgctacctgattct-aaactgaccaggcacgatctattaacctgttgc 681
            | |||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||
Sbjct: 2522 acacatatccatcgctacctgattctaaaactgaccaggcacgatctaataacctggtgc 2581

                                                                        
Query: 682  tcttcggacggtttatggaaaaaagtttaccgctcacttatgttgatttccagggtttga 741
            ||| || |||||| ||||||||||||||| |||||||| ||||||||||| |||||||| 
Sbjct: 2582 tctccgtacggttcatggaaaaaagtttagcgctcactaatgttgatttcgagggtttgt 2641

                                                                        
Query: 742  tttggggtgactaaccgatttggttgggcatttgcgtttaaattttggggaaacgttttg 801
             ||| | ||||| || |||||| |||| |||| ||||||||||||| ||||| |||||| 
Sbjct: 2642 attgtgttgacttactgatttgtttggtcattggcgtttaaatttttgggaagcgttttt 2701

                                   
Query: 802  gttgggttttgtttccccttttt 824
            ||| | |||||||| | ||||||
Sbjct: 2702 gtttgtttttgttttcgcttttt 2724


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6075
Number of Sequences: 1807
Number of extensions: 6075
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 895
length of database: 10,358,551
effective HSP length: 16
effective length of query: 879
effective length of database: 10,329,639
effective search space: 9079752681
effective search space used: 9079752681
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)