BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE09RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1721 1100 0.0
>3x_Contig1721
Length = 17834
Score = 1100 bits (555), Expect = 0.0
Identities = 639/659 (96%), Gaps = 6/659 (0%)
Strand = Plus / Plus
Query: 47 agtagcattttctcgaactctaggtcctcttcgatgacattttggtctgtaacggtaatt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5457 agtagcattttctcgaactctaggtcctcttcgatgacattttggtctgtaacggtaatt 5516
Query: 107 tgtgttccccatacagtacgttccttcatttttggtttcgatgaagcttcgtcatctggc 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5517 tgtgttccccatacagtacgttccttcatttttggtttcgatgaagcttcgtcatctggc 5576
Query: 167 gatgctgacaatgcaatatttgaaggatggttaacggtactggtcttttttgatggaaac 226
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 5577 gatgctgacaatgcaatatttgaaggatggttaacggtactggtcttctttgatggaaac 5636
Query: 227 tgagtggctggcttttgcataggtggatactggttattgttttcacgttggtagaattct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5637 tgagtggctggcttttgcataggtggatactggttattgttttcacgttggtagaattct 5696
Query: 287 aggtgttcttgctcaagtcgttcttggtaggtaatcttgtctttatcctctttgtttctc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5697 aggtgttcttgctcaagtcgttcttggtaggtaatcttgtctttatcctctttgtttctc 5756
Query: 347 tttgtcatcgcttttcttgtgcctttgtctcaactcagcaaagaatttgttataaacttc 406
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5757 tttgtcatcgcttttc-tgtgcctttgtctcaactcagcaaagaatttgttataaacttc 5815
Query: 407 ctttggaatgatgtcctcattgcgccaatcaaggtcaacgaatgctaactctgtaccaat 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5816 ctttggaatgatgtcctcattgcgccaatcaaggtcaacgaatgctaactctgtaccaat 5875
Query: 467 cggtaaatgagagatatacttgaatttggatatagttgtttccgtaaccattgatccgta 526
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5876 cggtaaatgagagaaatacttgaatttggatatagttgtttccgtaaccattgatccgta 5935
Query: 527 atggatgtctttcactttgatcttgatagtgctagggaattcgtggtagtgtgcaaatac 586
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5936 atggatgtcttcaactttgatcttgatagtgctagggaattcgtggtagtgtgcaaatac 5995
Query: 587 gttttttcacacctttacgtctaatggtggaggataaaatttcggggtgga-ttgaaccc 645
|||||| ||||||| ||||||||||||| | |||||||||||| |||||| ||||||||
Sbjct: 5996 gtttttcaacaccttaacgtctaatggtgaaagataaaatttcgtggtggagttgaaccc 6055
Query: 646 acgcct-ggaatag-agaatgcattatcataattg-atttttctaatccccccgatgca 701
| |||| | ||||| ||||||||||||||| |||| ||||||||||||| || ||||||
Sbjct: 6056 a-gcctcgtaatagaagaatgcattatcatcattgtatttttctaatccacctgatgca 6113
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7007
Number of Sequences: 1807
Number of extensions: 7007
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)