BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE10FM1.SCF screened BAC_end
(944 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig911 1088 0.0
>3x_Contig911
Length = 4722
Score = 1088 bits (549), Expect = 0.0
Identities = 732/776 (94%), Gaps = 13/776 (1%)
Strand = Plus / Minus
Query: 87 tattctcgttttccttcaggattctgttcacgtaagttaatgcactggacatcgctccac 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1132 tattctcgttttccttcaggattctgttcacgtaagttaatgcactggacatcgctccac 1073
Query: 147 ttaaactactcttcatcgaaaccttactctcttgaccttctaattcttccttgaacaacc 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1072 ttaaactactcttcatcgaaaccttactctcttgaccttctaattcttccttgaacaacc 1013
Query: 207 tataccattgctccaccactatctcatccacattacggaaccctctatacatgtcagaac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 tataccattgctccaccactatctcatccacattacggaaccctctatacatgtcagaac 953
Query: 267 ttaccatagacatactaggtttcgaatcagccgatggatacaaatatttcataccctcgg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 ttaccatagacatactaggtttcgaatcagccgatggatacaaatatttcataccctcgg 893
Query: 327 agtgtgcagcaatgaggcacacctggtttcctgaattgaaagccaaatgcgcattcaaaa 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 agtgtgcagcaatgaggcacacctggtttcctgaattgaaagccaaatgcgcattcaaaa 833
Query: 387 acactacgatggacttcaacgcctctataagttgcttctcaccagaacttccttccgaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 acactacgatggacttcaacgcctctataagttgcttctcaccagaacttccttccgaac 773
Query: 447 cactaccagattgttgtttcgtaagctggacccatgaatgaatgctggtatcaaccacaa 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cactaccagattgttgtttcgtaagctggacccatgaatgaatgctggtatcaaccacaa 713
Query: 507 cagtgagaagagaaagcgtatcctctatttcttgagtctttcgaattggttccttggaac 566
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 712 cagtgagaagagaaggcgtatcctctatttcttgagtc-ttcgatttggttccttggaac 654
Query: 567 actgtatcagcgatggcatccatttttacccgcttttctctttcaaagaanaagctatta 626
|||||||||||||||||||||| ||||| |||| || ||||||||||||| | ||||||
Sbjct: 653 actgtatcagcgatggcatcca-ttttaaccgc-ttcctctttcaaagaaaaggctatt- 597
Query: 627 aatattaaaaaccttgattcacaaagttgtattcgatccctttatgggatatgaaagcgt 686
|||| ||||||||| |||||||||||||||||||| ||||||||| ||||| ||||||
Sbjct: 596 aataataaaaacctgatttcacaaagttgtattcgat-cctttatggtatatg-aagcgt 539
Query: 687 tttaatttaatctatggggcctagctttactctaccgatttgattctccttttaagaatc 746
||||||||||||||| ||| |||||||||||||| |||||||| ||| | |||||| |||
Sbjct: 538 tttaatttaatctat-gggtctagctttactcta-cgatttga-tcttcctttaag-atc 483
Query: 747 accttcaactcctaaatgtccttttcccaaattcattttacttggaaattcttggccggc 806
| |||||||| |||||||| | |||||||||||||| |||||| |||||| ||||| ||
Sbjct: 482 agcttcaact-ctaaatgtgcctttcccaaattcatgttactt-gaaatttctggcc-gc 426
Query: 807 ccaaaacctttggcccccaaatgttaccccttttactcgaaaaaaaatatgaacaa 862
|| ||| | |||||||| |||||| | |||| |||||||||||| ||||||||
Sbjct: 425 ccgaaaacattggccccaaaatgtagcagctttaactcgaaaaaaataatgaacaa 370
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6654
Number of Sequences: 1807
Number of extensions: 6654
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 944
length of database: 10,358,551
effective HSP length: 16
effective length of query: 928
effective length of database: 10,329,639
effective search space: 9585904992
effective search space used: 9585904992
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)