BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE10RM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1030 377 e-104
3x_Contig147 351 2e-96
>3x_Contig1030
Length = 5200
Score = 377 bits (190), Expect = e-104
Identities = 254/266 (95%), Gaps = 7/266 (2%)
Strand = Plus / Plus
Query: 422 gcaccagctcctgaagaaactagcttgatttgctctttcagaca-tgatatttgaggtaa 480
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 13 gcaccagctcctgaagaaactagcttgatttgctctt-cagacaatgatatttgaggtaa 71
Query: 481 attcaattcaccagtcgttggtggaggaggcaaaaagcctaccttattcaaaaaggc-at 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 72 attcaattcaccagtcgttggtggaggaggcaaaaagcctaccttattcaaaaaggcaat 131
Query: 540 attaataccgatttgttctggggttagct-ctttccctgaagaaacgtcaacacctgtcc 598
|| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 132 ataaataccgatttgttctgggg-tagctcctttccctgaagaaacgtcaacacctgtcc 190
Query: 599 attttttatctttttgcaagaatgaaagtcgcatttggatcatctaattcaggagcccct 658
|||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| ||||
Sbjct: 191 attttttatctttttgcaaggatg-aagtcgcatttgtatcatctaattcaggag-ccct 248
Query: 659 ggtgttcttcgctaagccattcaata 684
|||||||| ||||||||||| |||||
Sbjct: 249 ggtgttctccgctaagccatccaata 274
>3x_Contig147
Length = 1050
Score = 351 bits (177), Expect = 2e-96
Identities = 177/177 (100%)
Strand = Plus / Plus
Query: 41 cttcgcaggtgttcatcttagacccatggtggaaccccagtgttgaatggcagagtggtg 100
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 874 cttcgcaggtgttcatcttagacccatggtggaaccccagtgttgaatggcagagtggtg 933
Query: 101 atagagtccatagaattggtcaattccggccagtgaaaattacaagattctgtattgaag 160
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 934 atagagtccatagaattggtcaattccggccagtgaaaattacaagattctgtattgaag 993
Query: 161 atagcatagagtccagaattatcgaacttcaagaaaagaaggctagcatgattcatg 217
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 994 atagcatagagtccagaattatcgaacttcaagaaaagaaggctagcatgattcatg 1050
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8116
Number of Sequences: 1807
Number of extensions: 8116
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 2
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)