BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE11FM1.SCF screened BAC_end
(899 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1731 1164 0.0
>3x_Contig1731
Length = 24233
Score = 1164 bits (587), Expect = 0.0
Identities = 686/707 (97%), Gaps = 9/707 (1%)
Strand = Plus / Minus
Query: 86 aaccaatgatagattgtaatttcaaatgaacaacaataatgtgtgcagccagaaaaaaaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20769 aaccaatgatagattgtaatttcaaatgaacaacaataatgtgtgcagccagaaaaaaaa 20710
Query: 146 tcaatgaagaaaaacaaacattacaattttgaaggggtgacaaagcatggtctgctacac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20709 tcaatgaagaaaaacaaacattacaattttgaaggggtgacaaagcatggtctgctacac 20650
Query: 206 tggtagttcatagtatcaacaatcaacaatctaactaaagctaggctcccagtctcagag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20649 tggtagttcatagtatcaacaatcaacaatctaactaaagctaggctcccagtctcagag 20590
Query: 266 caaagcacagtgacggaaaaacgaaggaaaaaaaataaagtcacatacccttatactttg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20589 caaagcacagtgacggaaaaacgaaggaaaaaaaataaagtcacatacccttatactttg 20530
Query: 326 gcaaagctcctgattttgaagcggccttggattttggggacacagcggtcgatttcttag 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20529 gcaaagctcctgattttgaagcggccttggattttggggacacagcggtcgatttcttag 20470
Query: 386 tagtcttaacaactttggcagccatttctgatagtattgtataatggtagaggaatagga 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20469 tagtcttaacaactttggcagccatttctgatagtattgtataatggtagaggaatagga 20410
Query: 446 cagttacttataatatgactggatgctaaaatctttctttcaatattaaatcacaataat 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20409 cagttacttataatatgactggatgctaaaatctttctttcaatattaaatcacaataat 20350
Query: 506 atttttttgctctcttaacttttgtttataattgcagataacgtctcaatttgcggccag 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20349 atttttttgctctcttaacttttgtttataattgcagataacgtctcaatttgcggccag 20290
Query: 566 aaaaacttct-aatttcactcaatcaaactttggt-acaaaataacagaatagctcatac 623
|||||||||| |||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct: 20289 aaaaacttctaaatttcactcaatcaaactttggtaacaaataaacagaatagctcaaac 20230
Query: 624 -atagggttcaaacgatgatatatagctctctctttctcttt-aaacttc-taactgttg 680
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct: 20229 aatagggttcaaacgatgatatatagctctctctttctctttaaaacttcttaactgttg 20170
Query: 681 ttgttg-aaataacatgggatgtatctct-aggc-tttttggttggtttttttatatttc 737
|||||| ||||||||||| |||||||||| |||| |||||| ||| ||||||||||||||
Sbjct: 20169 ttgttgtaaataacatggaatgtatctctaaggcttttttgtttgttttttttatatttc 20110
Query: 738 cattcaattcggggtttgttttggtttgaatttttccaccctttttt 784
|||||| |||| | ||||||||| |||| ||||||| || |||||||
Sbjct: 20109 cattcagttcgtgttttgttttgttttg-atttttcgactctttttt 20064
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9637
Number of Sequences: 1807
Number of extensions: 9637
Number of successful extensions: 78
Number of sequences better than 1.0e-20: 1
length of query: 899
length of database: 10,358,551
effective HSP length: 16
effective length of query: 883
effective length of database: 10,329,639
effective search space: 9121071237
effective search space used: 9121071237
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)