BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZE11RM1.SCF screened BAC_end
         (953 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1334                                                        1217   0.0  

>3x_Contig1334 
          Length = 7302

 Score = 1217 bits (614), Expect = 0.0
 Identities = 684/704 (97%), Gaps = 3/704 (0%)
 Strand = Plus / Plus

                                                                        
Query: 49   ttatcaaccacccaagcatccaatttatcccactcgtcaggagatcttccgtagatagag 108
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1711 ttatcaaccacccaagcagccaatttatcccactcgtcaggagatcttccgtagatagag 1770

                                                                        
Query: 109  attctgtactcgcagttctgatattttgaattttccaaatctgaaatgacttccgttgtt 168
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1771 attctgtactcgcagttctgatattttgaattttccaaatctgaaatgacttccgttgtt 1830

                                                                        
Query: 169  atttcagcgagatacttaccatcgatataattgtcggtttttaggaatatctcacgtaaa 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1831 atttcagcgagatacttaccatcgatataattgtcggtttttaggaatatctcacgtaaa 1890

                                                                        
Query: 229  cgagattccccaataggattatatttcaaattgaatttgtcaaacctatgaaatgtatcc 288
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1891 cgagattccccaataggattatatttcaaattgaatttgtcaaacctatgaaatgtatcc 1950

                                                                        
Query: 289  ttgtgtgcatgcatatccaaagtatcgatagaaaggtcataccctgacagtttcaacgat 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1951 ttgtgtgcatgcatatccaaagtatcgatagaaaggtcataccctgacagtttcaacgat 2010

                                                                        
Query: 349  tggaagacctcttctaatgtcaagattttttcatctctaaaaatgaccttttcatctttc 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2011 tggaagacctcttctaatgtcaagattttttcatctctaaaaatgaccttttcatctttc 2070

                                                                        
Query: 409  gaatggcgcaatttatgctttatgaaacgaagcaaatgcttttgattcatacatgccgaa 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2071 gaatggcgcaatttatgctttatgaaacgaagcaaatgcttttgattcatacatgccgaa 2130

                                                                        
Query: 469  tggtgaacgtgagtatctacttttctgacattgtagaaatctctatgagggttctttttt 528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2131 tggtgaacgtgagtatctacttttctgacattgtagaaatctctatgagggttctttttt 2190

                                                                        
Query: 529  gatacagcagtttcatgatattcgtttagaagcgaatacaaattccaacgagctttcaag 588
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |
Sbjct: 2191 gatacagcagtttcatgatattcgtttagaagcgaatacaaattccaacgagcttcaagg 2250

                                                                        
Query: 589  tatttgcatcttctgaaagcaaatgattttgctggaccatcnagagagacangaatgatc 648
            ||||   ||||||||||||||||||||||||||||||||||    ||||||  |||||||
Sbjct: 2251 tattgcaatcttctgaaagcaaatgattttgctggaccatcagaggagacagaaatgatc 2310

                                                                        
Query: 649  ttttccatgtcaatataatattcacgttgtgttggaaagacgtttccagcctgttttttt 708
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct: 2311 ttttccatgtcaatataatattcacgtagtgttggaaagacgtttccagcctg-tttttt 2369

                                                        
Query: 709  gtcctcaggtttaattatcatattaaaacattaacttcatcgct 752
            ||||||| |||| | ||||||| |||||||| ||||||||||||
Sbjct: 2370 gtcctca-gttttagtatcata-taaaacataaacttcatcgct 2411


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8057
Number of Sequences: 1807
Number of extensions: 8057
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 953
length of database: 10,358,551
effective HSP length: 16
effective length of query: 937
effective length of database: 10,329,639
effective search space: 9678871743
effective search space used: 9678871743
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)