BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZE12RM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1568 1346 0.0
>3x_Contig1568
Length = 12470
Score = 1346 bits (679), Expect = 0.0
Identities = 794/821 (96%), Gaps = 10/821 (1%)
Strand = Plus / Plus
Query: 47 ttgctacccaaccaagggctttacaataaacaatcaacaggcgtatatagattcttggaa 106
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 9030 ttgctacccaaccaagg-caaaacaataaacaatcaacaggcgtatatagattcttggaa 9088
Query: 107 gggtctcgatctatatcaccacaccaaagcagttcaagaggaaaatgtcgatacgacagt 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9089 gggtctcgatctatatcaccacaccaaagcagttcaagaggaaaatgtcgatacgacagt 9148
Query: 167 gcttcatgaacaggaatatgcacgctacagcagagtgatgaaagcagagatagtttcttt 226
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9149 gcttcatgaacaggaatatgcacgctacagcagagtgatgaaagcagagagagtttcttt 9208
Query: 227 gacatattactttgacataccaggaattgtacctgctaacagctcttccatcaactctca 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9209 gacatattactttgacataccaggaattgtacctgctaacagctcttccatcaactctca 9268
Query: 287 gagtgatagggatgaaagtttgaattgcaaccaagatgatgacacaccggctttcggaac 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9269 gagtgatagggatgaaagtttgaattgcaaccaagatgatgacacaccggctttcggaac 9328
Query: 347 tgacattcacatttatacagcagcagtatattatggcccctgggctcataaacatatgca 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9329 tgacattcacatttatacagcagcagtatattatggcccctgggctcataaacatatgca 9388
Query: 407 ggatattatacggcttttttctccaatagtatcccgagatcaaatgaaagctacaaaacc 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9389 ggatattatacggcttttttctccaatagtatcccgagatcaaatgaaagctacaaaacc 9448
Query: 467 cgaaccgggatcgttaagaatctacgaaaacttcaaattatctgtggattttcgagacaa 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9449 cgaaccgggatcgttaagaatctacgaaaacttcaaattatctgtggattttcgagacaa 9508
Query: 527 aagcgtgttgcacattccaactagagagtctagtaaagatgaagagttcatcaaaagata 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9509 aagcgtgttgcacattccaactagagagtctagtaaagatgaagagttcatcaaaagata 9568
Query: 587 taaaacaactggagatactcatagggncctttggttaggcttaatggtttctctcaacga 646
|||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||
Sbjct: 9569 taaaacaactggagatactcataggg-cctttggtt-ggcttaat-gtttctctcaacga 9625
Query: 647 ggggaggagagattcttttcaatcttgcattatgttcccaagccgatcggcta-canatg 705
||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||
Sbjct: 9626 -gggaggagagattcttttcaatcttgcattatgttcccaagccgaccggctaccaaatg 9684
Query: 706 agctctacgtccttttactaaatccgggaaataaatctagtggtaatcatgaagtgctat 765
||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||
Sbjct: 9685 agctctacgtccttttactaaatccggaaataaaatctagtgttaatcatgaagtgctat 9744
Query: 766 ttagatgccacacccagactattaaagcgaatattggatattcaacaaggtgggaacaaa 825
|||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||||||
Sbjct: 9745 ttagatgcaacacccagactattaaagcgaatattggatatccaac-aggttggaacaaa 9803
Query: 826 caggccggcttgggtggtttgagctttgatagtaagactgc 866
||||| | || ||| |||||||| ||||||||| ||||||
Sbjct: 9804 caggcggact--ggttgtttgagc-ttgatagtaggactgc 9841
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5850
Number of Sequences: 1807
Number of extensions: 5850
Number of successful extensions: 41
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)