BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF01FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1277 1402 0.0
>3x_Contig1277
Length = 5748
Score = 1402 bits (707), Expect = 0.0
Identities = 749/762 (98%), Gaps = 1/762 (0%)
Strand = Plus / Plus
Query: 89 ccaaaattttgaaggagaacggtgccaaggatattcctgtcggggaacccattgcataca 148
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2462 ccaaaattttgaaggagaacggtgccaaggatattcctgtcggggaacccattgcataca 2521
Query: 149 tcgctgatgtggacgatgatttggccactttggagttcccaaagcccgttgaagccaaga 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2522 tcgctgatgtggacgatgatttggccactttggagttcccaaagcccgttgaagccaaga 2581
Query: 209 aagaatcaaagccagttgaaactaaaaaggaggaggccaaaccagtggaaaaaactgaca 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2582 aagaatcaaagccagttgaaactaaaaaggaggaggccaaaccagtggaaaaaactgaca 2641
Query: 269 agaagaagcaaaccagtgcttcaaaaacaccttctaagaacggcagtgttcaggctaatg 328
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2642 agaagaagcaaaccagtgcttcaaaaacaccttctaagaacggcagtgttcaggctaatg 2701
Query: 329 catctcaaacattattcccatctgtgctatcactactagaggaaaacaatatttcaactg 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2702 catctcaaacattattcccatctgtgctatcactactagaggaaaacaatatttcaactg 2761
Query: 389 cagatgcgttggacaaaatcaaggccactggtccaaacggtagaatcttaaaaggtgatg 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2762 cagatgcgttggacaaaatcaaggccactggtccaaacggtagaatcttaaaaggtgatg 2821
Query: 449 tgctagcctatttgggtaagatttcccaagattcgttgaacaaggtaaccgagtacatca 508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2822 tgctagcctatttgggtaagatttcccaagattcgttgaacaaggtaaccgagtacatca 2881
Query: 509 aatcccatgagaaattggatctaaccaacatcgaattaagacctgctagagaaactgcag 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2882 aatcccatgagaaattggatctaaccaacatcgaattaagacctgctagagaaactgcag 2941
Query: 569 cagcagcagcagcagcacaagctgctaaacccgctaaaccattacctctagtactaagcg 628
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2942 cagcagcagcagcagcacaagctgctaaacccgctaaaccattacctctagtactaagcg 3001
Query: 629 aacagatcacactccatgttccagataacgtcacttactcccaactatctgctgcgatag 688
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 3002 aacagatcacactccatgtcccagaaaacgtcacttactcccaactatctgctgcgatag 3061
Query: 689 catcgtacgtcaagggatgttcattcttggcacacgacgaaccattgaccaatgacgcat 748
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3062 catcgtacgtcaaggaatgttcattcttggcacacgacgaaccattgaccaatgacgcat 3121
Query: 749 tcgnactattcgacccattatttcgagagttacttgtacaagaaccaacaaaacctcgtt 808
|| ||||| |||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 3122 ccgaactatacgacccattattcgaagagttactagtacaagaaccaacaaaacctcgtt 3181
Query: 809 tcaaggtcactt-ttacatagtagacttggaacctaccccaa 849
|||||||||||| | |||||||||||||||||||||| ||||
Sbjct: 3182 tcaaggtcacttataacatagtagacttggaacctacaccaa 3223
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6654
Number of Sequences: 1807
Number of extensions: 6654
Number of successful extensions: 319
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)