BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF01RM1.SCF screened BAC_end
(933 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1447 1499 0.0
>3x_Contig1447
Length = 7802
Score = 1499 bits (756), Expect = 0.0
Identities = 862/892 (96%), Gaps = 5/892 (0%)
Strand = Plus / Minus
Query: 43 cttcttcgttgactttatcgacgtctatctttgttaagaagacaatgttcgcaacttgga 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3703 cttcttcgttgactttatcgacgtctatctttgttaagaagacaatgttcgcaacttgga 3644
Query: 103 ccaatactatgcgggattttggattttttgattttagatcgaaggtgtcatttgatttgg 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3643 ccaatactatgcgggattttggattttttgattttagatcgaaggtgtcatttgatttgg 3584
Query: 163 gcaatacgtggagtaagctcaaagtaagtgatcccgaaggtaaatggaattacaactgct 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3583 gcaatacgtggagtaagctcaaagtaagtgatcccgaaggtaaatggaattacaactgcg 3524
Query: 223 atatcaatagcgactccaatgactgtggtttccaaatgttcatcgtttatggtggaggtg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3523 atatcaatagcgactccaatgactgtggtttccaaatgttcatcgtttatggtggaggtg 3464
Query: 283 tggaaggtgattcagatattttcagccctggtattatagccgccattggtgatgtatatg 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3463 tggaaggtgattcagatattttcagccctggtattatagccgccattggtgatgtatatg 3404
Query: 343 aagaaaatccctctggtgatttcttaaaaatgggtacctttatttcaagagacgatggtt 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3403 aagaaaatccctctggtgatttcttaaaaatgggtacctttatttcaagagacgatggtt 3344
Query: 403 cgacctgggaaaaggtactcgatttcccgagtagagttgtaatgggtgactacggtaata 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3343 cgacctgggaaaaggtactcgatttcccgagtagagttgtaatgggtgactacggtaata 3284
Query: 463 tcattcttgcagtgccgtttgatccagaatctgataaagacccgcagagcgaattctact 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3283 tcattcttgcagtgccgtttgatccagaatctgataaagacccgcagagcgaattctact 3224
Query: 523 tctccttagaccaagggaaaacattccaagagtaccaacttgacanatcgttctacccaa 582
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 3223 tctccttagaccaagggaaaacattccaagagtaccaacttgacaaatcgttctacccaa 3164
Query: 583 ctgaattattaccatctgctntggacggatccggaaattcattcatgttagtcggtacaa 642
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 3163 ctgaattattaccatctgctttggacggatccggaaattcattcatgttagtcggtacaa 3104
Query: 643 ttatgtctgaaga-taccagaatctagagtccgtgtnctacgtcgttgatttctccgatg 701
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3103 ttatgtctgaagattaccagaatctagagtccgtgtcctacgtcgttgatttctccgatg 3044
Query: 702 cattcaagggtgccagctgtaaaacttctgatttggaagattggtattactcttacggtc 761
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 3043 cattcaagggtgccagctgtaaaacttctgatatggaagattggtattactctaacggtc 2984
Query: 762 aatgtgtttgacggtactattctcaaaattcgtagaagaaagcaggaagcttcatgttct 821
|||||| |||||||||||||||||||| | |||||||||||||| || ||| ||| |||
Sbjct: 2983 aatgtg-ttgacggtactattctcaaattccgtagaagaaagcaagatgctcaatg-tct 2926
Query: 822 aattaagaccacttacaaagatctcactttccaagaaaaattgggttggctgtancgaac 881
||||||||||||||||||||||||||||||| | ||| ||||| | |||||||| |||||
Sbjct: 2925 aattaagaccacttacaaagatctcactttcgaggaagaattgtg-tggctgtagcgaac 2867
Query: 882 tttaatacgaatgcgcctgatgattttttcattaattcacctggtaaatgcg 933
| | |||||||||| |||||||||| | ||| ||||| ||||||||||||
Sbjct: 2866 tagactacgaatgcg-ctgatgatttctccatcgattcagctggtaaatgcg 2816
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6720
Number of Sequences: 1807
Number of extensions: 6720
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 933
length of database: 10,358,551
effective HSP length: 16
effective length of query: 917
effective length of database: 10,329,639
effective search space: 9472278963
effective search space used: 9472278963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)