BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZF04FM1.SCF screened BAC_end
         (959 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1660                                                         965   0.0  

>3x_Contig1660 
          Length = 13166

 Score =  965 bits (487), Expect = 0.0
 Identities = 547/566 (96%), Gaps = 1/566 (0%)
 Strand = Plus / Minus

                                                                         
Query: 87    tgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgtagtc 146
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11052 tgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgtagtc 10993

                                                                         
Query: 147   tactttactcgagttattagtggttgtgctagtagaggctgcaggtgtgctgagaacact 206
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10992 tactttactcgagttattagtggttgtgctagtagaggctgcaggtgtgctgagaacact 10933

                                                                         
Query: 207   gtgagttgtcgctccagcagcaccagcaccattgctgatagcactcgtgctgctgctgct 266
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10932 gtgagttgtcgctccagcagcaccagcaccattgctgatagcactcgtgctgctgctgct 10873

                                                                         
Query: 267   gctgctgctgttgcttttgtttccattgctccctgtatgagatactttccccaccttgcc 326
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10872 gctgctgctgttgcttttgtttccattgctccctgtatgagatactttccccaccttgcc 10813

                                                                         
Query: 327   ccgtttcaactctttctcattcttggctagtttccccaccaaatcccgttggcatcgctc 386
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10812 ccgtttcaactctttctcattcttggctagtttccccaccaaatcccgttggcatcgctc 10753

                                                                         
Query: 387   gtacacgtccattatcttgttttgtatctcgttgatttgtaaatgataaaacgttatctg 446
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10752 gtacacgtccattatcttgttttgtatctcgttgatttgtaaatgataaaacgttatctg 10693

                                                                         
Query: 447   tccatcgttc-aacttgtctgtttcgggaacatttcttttatcatatncagaattttgtt 505
             |||||||||| |||||||||| ||||||||||| ||||||||||||| |||||||| |||
Sbjct: 10692 tccatcgttcaaacttgtctggttcgggaacatctcttttatcatatccagaatttcgtt 10633

                                                                         
Query: 506   gatcttgatatcttccatgcgagttaacttgggtatcttatgaacgttgaacccagttcc 565
             |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| 
Sbjct: 10632 gatcttgatatcttccatgcgagtaaacttgtgtatcttatgatcgttgaacccagttcg 10573

                                                                         
Query: 566   gtatctaatcaacgatacttttttcgtttggggattcaataactcatcggattattcatt 625
               ||||||||||||||||||| |||||||| | |||||||||||||||| || || ||| 
Sbjct: 10572 taatctaatcaacgatactttattcgtttgtgaattcaataactcatcgtataatacatc 10513

                                       
Query: 626   cagcagcaaaaactttttgaacatgg 651
             |||||||||||||| |||||||||||
Sbjct: 10512 cagcagcaaaaactctttgaacatgg 10487


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,559
Number of Sequences: 1807
Number of extensions: 10559
Number of successful extensions: 470
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)