BLASTN 2.2.3 [May-13-2002] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= FJ0AC39ZF04FM1.SCF screened BAC_end (959 letters) Database: Klactis 3X assemblage 11/02 1807 sequences; 10,358,551 total letters Searching....done Score E Sequences producing significant alignments: (bits) Value 3x_Contig1660 965 0.0 >3x_Contig1660 Length = 13166 Score = 965 bits (487), Expect = 0.0 Identities = 547/566 (96%), Gaps = 1/566 (0%) Strand = Plus / Minus Query: 87 tgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgtagtc 146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 11052 tgctatcacagtatctctgtacatcgccaagatcttgccacgacgcgatttcatgtagtc 10993 Query: 147 tactttactcgagttattagtggttgtgctagtagaggctgcaggtgtgctgagaacact 206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10992 tactttactcgagttattagtggttgtgctagtagaggctgcaggtgtgctgagaacact 10933 Query: 207 gtgagttgtcgctccagcagcaccagcaccattgctgatagcactcgtgctgctgctgct 266 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10932 gtgagttgtcgctccagcagcaccagcaccattgctgatagcactcgtgctgctgctgct 10873 Query: 267 gctgctgctgttgcttttgtttccattgctccctgtatgagatactttccccaccttgcc 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10872 gctgctgctgttgcttttgtttccattgctccctgtatgagatactttccccaccttgcc 10813 Query: 327 ccgtttcaactctttctcattcttggctagtttccccaccaaatcccgttggcatcgctc 386 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10812 ccgtttcaactctttctcattcttggctagtttccccaccaaatcccgttggcatcgctc 10753 Query: 387 gtacacgtccattatcttgttttgtatctcgttgatttgtaaatgataaaacgttatctg 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10752 gtacacgtccattatcttgttttgtatctcgttgatttgtaaatgataaaacgttatctg 10693 Query: 447 tccatcgttc-aacttgtctgtttcgggaacatttcttttatcatatncagaattttgtt 505 |||||||||| |||||||||| ||||||||||| ||||||||||||| |||||||| ||| Sbjct: 10692 tccatcgttcaaacttgtctggttcgggaacatctcttttatcatatccagaatttcgtt 10633 Query: 506 gatcttgatatcttccatgcgagttaacttgggtatcttatgaacgttgaacccagttcc 565 |||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||| Sbjct: 10632 gatcttgatatcttccatgcgagtaaacttgtgtatcttatgatcgttgaacccagttcg 10573 Query: 566 gtatctaatcaacgatacttttttcgtttggggattcaataactcatcggattattcatt 625 ||||||||||||||||||| |||||||| | |||||||||||||||| || || ||| Sbjct: 10572 taatctaatcaacgatactttattcgtttgtgaattcaataactcatcgtataatacatc 10513 Query: 626 cagcagcaaaaactttttgaacatgg 651 |||||||||||||| ||||||||||| Sbjct: 10512 cagcagcaaaaactctttgaacatgg 10487 Database: Klactis 3X assemblage 11/02 Posted date: Nov 27, 2002 12:23 PM Number of letters in database: 10,358,551 Number of sequences in database: 1807 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 10,559 Number of Sequences: 1807 Number of extensions: 10559 Number of successful extensions: 470 Number of sequences better than 1.0e-20: 1 length of query: 959 length of database: 10,358,551 effective HSP length: 16 effective length of query: 943 effective length of database: 10,329,639 effective search space: 9740849577 effective search space used: 9740849577 T: 0 A: 40 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 51 (101.6 bits)