BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF04RM1.SCF screened BAC_end
(943 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1215 0.0
>3x_Contig1802
Length = 45229
Score = 1215 bits (613), Expect = 0.0
Identities = 689/704 (97%), Gaps = 8/704 (1%)
Strand = Plus / Minus
Query: 45 cttcggtttggtaagtagcatcgtaattatagcatccttttcctgaaggtaccattggat 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21631 cttcggtttggtaagtagcatcgtaattatagcatccttttcctgaaggtaccattggat 21572
Query: 105 aatgataataagcgacttcaaaacctgaagagggagaattcttggaaggcttacaaccga 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21571 aatgataataagcgacttcaaaacctgaagagggagaattcttggaaggcttacaaccga 21512
Query: 165 gaatggtcccaccatcagtattctgtgactctgcattactgaaaggtagtaaaaacagca 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21511 gaatggtcccaccatcagtattctgtgactctgcattactgaaaggtagtaaaaacagca 21452
Query: 225 atagcaaagaaaaacctttcgtcagcatcatacaatataattgaagactttctggtttta 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21451 atagcaaagaaaaacctttcgtcagcatcatacaatataattgaagactttctggtttta 21392
Query: 285 tcttattttactgtcagttaaagcgaaggatgtagtttttagtttatgtttcagaactgc 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21391 tcttattttactgtcagttaaagcgaaggatgtagtttttagtttatgtttcagaactgc 21332
Query: 345 gagtcaaatggaatttaagcgatgttacatgaaataaagcctaacatagatctgaggtac 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21331 gagtcaaatggaatttaagcgatgttacatgaaataaagcctaacatagatctgaggtac 21272
Query: 405 agaccaaaaaatcatgttatacttatatggaaaacggtcacagacctattagacggttga 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21271 agaccaaaaaatcatgttatacttatatggaaaacggtcacagacctattagacggttga 21212
Query: 465 tcatcaaagttcaacgaaatactcgaaaataacccttgacattttaccatccaatggaca 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 21211 tcatcaaagttcaacgaaatactcgaaaataacccttgacattttaccatccaatggaca 21152
Query: 525 ttgagagatagagatgatacaattgtgtataccaatttcctctc-aaatggagattat-g 582
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 21151 ttgagagatagagatgatacaattgtgtataccaatttcctctcaaaatggagattatag 21092
Query: 583 caccattgcaaattc-acanagacttatgggttcaaaaa-cacacatgacatgagcagta 640
||||||||||||||| ||| |||||||||| |||||||| ||||||||||||||||||||
Sbjct: 21091 caccattgcaaattcaacaaagacttatggtttcaaaaaccacacatgacatgagcagta 21032
Query: 641 tgtctcgaattaaccgatgcaagaggtctttttttttttgcgaacatctttctacagaga 700
|||||||||| |||||||||| || ||||||||||||||||||||||| |||||||||||
Sbjct: 21031 tgtctcgaataaaccgatgcagga-gtctttttttttttgcgaacatc-ttctacagaga 20974
Query: 701 gtcacatctgttggattgcaaacaattcttgtccttatacttct 744
|||| |||||||| |||||||| ||||| ||||||||||||||
Sbjct: 20973 gtca-atctgttgatttgcaaac-attctcgtccttatacttct 20932
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,127
Number of Sequences: 1807
Number of extensions: 13127
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)