BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF05FM1.SCF screened BAC_end
(965 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1296 1118 0.0
>3x_Contig1296
Length = 7334
Score = 1118 bits (564), Expect = 0.0
Identities = 595/604 (98%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 88 ggaaacaaaacgctttgctaccggttactactggtaaggaattatggtttactgttttgt 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1469 ggaaacaaaacgctttgctaccggttactactggtaaggaattatggtttactgttttgt 1528
Query: 148 cattaagtattaccaaacgtcaggttaaaaactgggaatatagatcaccaatgcgaaact 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1529 cattaagtattaccaaacgtcaggttaaaaactgggaatatagatcaccaatgcgaaact 1588
Query: 208 cgcattgtgatctcatctgtgaaacagaaaacaaaaggaaaagacgtggaatctcattag 267
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1589 cgcattgtgatctcagctgtgaaacagaaaacaaaaggaaaagacgtggaatctcattag 1648
Query: 268 tacctcttcaattacgtgactggaaatagcggtgatggcattacgtcggaggtgaaaagt 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1649 tacctcttcaattacgtgactggaaatagcggtgatggcattacgtcggaggtgaaaagt 1708
Query: 328 ctaatcacagtggaacaaaggtattcaaaccaggtgtaaaataaaaactggattttcttc 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1709 ctaatcacagtggaacaaaggtattcaaaccaggtgtaaaataaaaactggattttcttc 1768
Query: 388 cgatatagatactaggtttccacaatgtcaagctccgatttccaatacgcaaaagcatgt 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1769 cgatatagatactaggtttccacaatgtcaagctccgatttccaatacgcaaaagcatgt 1828
Query: 448 ttttcatgtgccgatcgatgcttttcctacgaacctcgatgttcgtttctcggtattttc 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1829 ttttcatgtgccgatcgatgcttttcctacgaacctcgatgttcgtttctcggtattttc 1888
Query: 508 tcagttttgagtatcacagacagttactgcaccatgtggacgccggaactccgaacctga 567
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1889 tcagttttgagtatcacagacagttactgcaccaggtggacgccggaactccgaacctga 1948
Query: 568 gctgttgaagtccgaatagtaaatattattctcggatggtatcgagttttttgaaacaaa 627
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1949 gctgttgaggtccgaatagtaaataatattctcggatggtatcgagttttttgaaacaaa 2008
Query: 628 ttcataccacacacttctctgccccgttccacaattattttcttattctgtccaacttaa 687
||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| ||
Sbjct: 2009 ttcataccacacactcttctgccccgttccacaatta-tttctcattctgtccaactaaa 2067
Query: 688 gaat 691
||||
Sbjct: 2068 gaat 2071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6902
Number of Sequences: 1807
Number of extensions: 6902
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 965
length of database: 10,358,551
effective HSP length: 16
effective length of query: 949
effective length of database: 10,329,639
effective search space: 9802827411
effective search space used: 9802827411
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)