BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF05RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1666 898 0.0
>3x_Contig1666
Length = 16162
Score = 898 bits (453), Expect = 0.0
Identities = 491/504 (97%)
Strand = Plus / Plus
Query: 44 gcttagatatccaagccgtattcatctaattcgtggtaatcatgaatcacgtcagatcac 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15556 gcttagatatccaagccgtattcatctaattcgtggtaatcatgaatcacgtcagatcac 15615
Query: 104 ccagagttatggtttttatacggaatgtttgaacaaatttggcgagggaagtcaagtatg 163
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15616 ccagagttatggtttttatacggaatgtttgaacaaatttggcgagggaagtcaagtatg 15675
Query: 164 gcagtatttcacggatctattcgattatttgattcttgcatgtatcattgatgatacaat 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15676 gcagtatttcacggatctattcgattatttgattcttgcatgtatcattgatgatacaat 15735
Query: 224 tttctgcgttcatggtggactttcacccaatattcaatccattgatcaaatacggattat 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15736 tttctgcgttcatggtggactttcacccaatattcaatccattgatcaaatacggattat 15795
Query: 284 cgataggatcagagaaatcccacatgatggcgccatggcagatttggtctggtcagaccc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15796 cgataggatcagagaaatcccacatgatggcgccatggcagatttggtctggtcagaccc 15855
Query: 344 tgaagacgacagaaacgatatcacttcttcacaattcaaagtctcaccgagaggtgctgg 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15856 tgaagacgacagaaacgatatcacttcttcacaattcaaagtctcaccgagaggtgctgg 15915
Query: 404 ttacactttcggtaaagctatagtggacaaattttttagcatcaatggtgtcacaaagat 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15916 ttacactttcggtaaagctatagtggacaaattttttagcatcaatggtgtcacaaagat 15975
Query: 464 gctcagagctcatcaactatgtaacgagggatatcangattattttggagggaaagtcac 523
|||||||||||||||||||||||||| ||| ||||| | ||||| | |||||||
Sbjct: 15976 gctcagagctcatcaactatgtaacgcgggctatcaggcttattctcccccccaagtcac 16035
Query: 524 cactgtttggtccgctcccaatta 547
|||||||||| |||||||||||||
Sbjct: 16036 cactgtttggcccgctcccaatta 16059
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8191
Number of Sequences: 1807
Number of extensions: 8191
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)