BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF06FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1383 1421 0.0
>3x_Contig1383
Length = 6139
Score = 1421 bits (717), Expect = 0.0
Identities = 811/833 (97%), Gaps = 7/833 (0%)
Strand = Plus / Plus
Query: 87 tccctcgctgctcaacaacaagttttccggcttcaaatcccgatgaactactttacaccc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4190 tccctcgctgctcaacaacaagttttccggcttcaaatcccgatgaactactttacaccc 4249
Query: 147 atgaatatactccaacgcatcgatcaattgacacataaaatgtttcgtccatgcctcatt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4250 atgaatatactccaacgcatcgatcaattgacacataaaatgtttcgtccatgcctcatt 4309
Query: 207 gaacctaccctgagtttgcaaaagctgcaacaattcacccccaggtgcaaaatctaatac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4310 gaacctaccctgagtttgcaaaagctgcaacaattcacccccaggtgcaaaatctaatac 4369
Query: 267 aaagtatagattctccgaatcatggaaagtgtaatacaatttgatgatccccggatgatt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4370 aaagtatagattctccgaatcatggaaagtgtaatacaatttgatgatccccggatgatt 4429
Query: 327 tccatgagccaataagttcaaagtgttcttttcaatggtcacatacttcactttgttttc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4430 tccatgagccaataagttcaaagtgttcttttcaatggtcacatacttcactttgttttc 4489
Query: 387 actaatgatatgtttcttcgagcacacttttatggcaaacagctgacctgtagatcgatc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4490 actaatgatatgtttcttcgagcacacttttatggcaaacagctgacctgtagatcgatc 4549
Query: 447 cacagccttatacaccgttgaatacgatccatggcccatccgttccttaaaagaaaaatc 506
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4550 cacagccttatacaccgttgaatacgatccatggcccagccgttccttaaaagaaaaatc 4609
Query: 507 ctgaggagtacgtttcctcgacatcactataacacaccacgagcgtcagaccgaaccagc 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4610 ctgaggagtacgtttcctcgacatcactataacacaccacgagcgtcagaccgaaccagc 4669
Query: 567 actttcgtcagttgaatagagtttccgtaacctagtagtatgttcctatcctgtaaataa 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4670 actttcgtcagttgaatagagtttccgtaacctagtagtatgttcctatcctgtaaataa 4729
Query: 627 gacactctttgaatagaagatccctaaagaaggtgatttggaatttaatatcagt-aaat 685
|||||||||||||||||||| |||||||||||||||||||||| |||| | ||| |||
Sbjct: 4730 gacactctttgaatagaagaaccctaaagaaggtgatttggaa-ttaaaacaagtaaaaa 4788
Query: 686 aaaaacaggcgtgaaaagtaaaaga-aatacacttctgacctttcatcgaggacaaattt 744
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct: 4789 aaaaacaggcgtgaaaagtaaaagataatacacttctgaccttcaatcgaggacaaattt 4848
Query: 745 atcataatacccacaatcgtaggatgttaactgtttgtcgacttctaaagatt-accact 803
|||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 4849 atcaaaatacccacaatcgtaggatgttaactgtttgtcgactcctaaagattcaccact 4908
Query: 804 gtagctcaatgggtactactattcacttcttttttaccttcaagcg-tacagaatgttgt 862
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 4909 gtagctcaatgggtactactattcacttcttttttaccttcaagcgttacagaatgttgt 4968
Query: 863 ttaaaggccctattgccgtttaacct-gatcaacattagg-aatttttgatgt 913
||||||||| || ||| || ||| || ||||||||||||| ||||||||||||
Sbjct: 4969 ttaaaggccttagtgctgtataaactagatcaacattaggaaatttttgatgt 5021
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6243
Number of Sequences: 1807
Number of extensions: 6243
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)