BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF06RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig293 1300 0.0
>3x_Contig293
Length = 1065
Score = 1300 bits (656), Expect = 0.0
Identities = 838/883 (94%), Gaps = 13/883 (1%)
Strand = Plus / Minus
Query: 51 atttccttttgttgacagctcttgtcatgataacgttttcaattgtgttgtcacagtata 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1027 atttccttttgttgacagctcttgtcatgataacgttttcaattgtgttgtcacagtata 968
Query: 111 gacggtatacaatgactggttttgtttggcctattctatgtgccctgtccatcgcttgga 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 967 gacggtatacaatgactggttttgtttggcctattctatgtgccctgtccatcgcttgga 908
Query: 171 gatcaacttgtgggttccagtcactgtcaaaaattatgacagaatctgtatcagtaagat 230
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 907 gatcaacttgtgggttccagtcactgtcaaaaattatgacagaatctgcagcagtaagat 848
Query: 231 tgataccgagacctgcagccctagtggatagtaggaatagattcgcctttgatcccttct 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tgataccgagacctgcagccctagtggatagtaggaatagattcgcctttgatcccttct 788
Query: 291 tgctgaactcttctatttgctctttacgagaattgttttgcatggacccgtcaattctgc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tgctgaactcttctatttgctctttacgagaattgttttgcatggacccgtcaattctgc 728
Query: 351 acgatatgaaattgtttaattcactccaatcttcgatcaaatcaagcatcgatacaaatt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 acgatatgaaattgtttaattcactccaatcttcgatcaaatcaagcatcgatacaaatt 668
Query: 411 gggaaaatatgagcaccttgtgtttcttcttgataagctcaggtaccaatttctgtaaga 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 gggaaaatatgagcaccttgtgtttcttcttgataagctcaggtaccaatttctgtaaga 608
Query: 471 cttgcaattttccagaagttttcaatagattctctaacgtaaggtctgttggctccaaga 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cttgcaattttccagaagttttcaatagattctctaacgtaaggtctgttggctccaaga 548
Query: 531 tggggatataaaacaaataagtggagttcacgatttgccgtaattgaatcatcatattnt 590
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 547 gggggaaataaaacaaataagtggagttcacgatttgccgtaattgaatcatcatatttt 488
Query: 591 gtaatctcttgntgagcaattctttgtgaatgtgcatgtcgtat-acttttccatcttgc 649
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 487 gtaatctcttgttgagcaattctttgtgaatgtgcatgtcgtataacttttccatcttgc 428
Query: 650 cgatgttatcgttgggtatattctgttgatctgcactt-atttccattcgatgaaatctt 708
||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||
Sbjct: 427 cgatgttatcgttgggtatatcctgtgaatctgcacttaatttccattcgatgaaatctc 368
Query: 709 ctatacttttattgggaaaccgtaccgatatattcagcatttaaaggggaaaaagtcctt 768
|||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct: 367 ttatacttttatt-ggaaaccgtaccgatatattcagcattt-aaggtgaaaaagtcctt 310
Query: 769 gatagcctggcttttggatgggnctcgttttaaattaccctttcaggcttgtntggnaaa 828
|||||||| ||||||| || || || |||||||||||||||| |||||||| | | ||
Sbjct: 309 gatagcct-gcttttgaat-ggtct-gttttaaattacccttcaaggcttgttt-gtaat 254
Query: 829 atttctttcgtaaggggggtcacaagaactgtgaaggatttattc-ctctttgggaggaa 887
||||||| |||| ||||||||| || |||| | ||| ||||| |||||| |||||||
Sbjct: 253 atttcttctgtaa-tggggtcacaggacatgtg-atgatatattctctcttt-ggaggaa 197
Query: 888 ggatatccagcaaaaacattctttttcaattttctaaataaga 930
|| ||||||| ||||||||||| |||||| |||| |||||||
Sbjct: 196 -gagatccagccaaaacattcttcttcaatcttcttaataaga 155
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7284
Number of Sequences: 1807
Number of extensions: 7284
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)