BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZF07FM1.SCF screened BAC_end
         (934 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1126                                                         813   0.0  

>3x_Contig1126 
          Length = 5421

 Score =  813 bits (410), Expect = 0.0
 Identities = 425/430 (98%)
 Strand = Plus / Minus

                                                                        
Query: 86   cttcagtggtatcttcatctaattcaacaccaaattcaaaacataattcatcgaattctt 145
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3287 cttcagtggtatcttcatctaattcaacaccaaattcaaaacataattcatcgaattctt 3228

                                                                        
Query: 146  cattggtgtagtttttgcccaaggcctcaaacaattgcctcttgttaactgaaatggtag 205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3227 cattggtgtagtttttgcccaaggcctcaaacaattgcctcttgttaactgaaatggtag 3168

                                                                        
Query: 206  gcatgttgttaatcaggaatcacaaagttaacaataatagctgaattttctataaaatgc 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3167 gcatgttgttaatcaggaatcacaaagttaacaataatagctgaattttctataaaatgc 3108

                                                                        
Query: 266  cccagcaaaaagaagataaaagtacgctgaaaatggatatatctggtaggaaatatgtcg 325
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3107 cccagcaaaaagaagataaaagtacgctgaaaatggatatatctggtaggaaatatgtcg 3048

                                                                        
Query: 326  cctgaaaccgttaaataacgacagccaattaatgatcagtggattctaattttaaaagga 385
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3047 cctgaaaccgttaaataacgacagccaattaatgatcagtggattctaattttaaaagga 2988

                                                                        
Query: 386  taaaacgaacgtaaccttatattgaaagttaacacatggtttagcatcattcgagatcgt 445
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2987 taaaacgaacgtaaccttatattgaaagttaacacatggtttagcatcattcgagatcgt 2928

                                                                        
Query: 446  aattactctttaaaacaattttcagtaatacatgaaaaatttgacagatcaaatcgtgta 505
            |||||||||||||||||||||||||||||||||||||||||  | |||| |||| |||||
Sbjct: 2927 aattactctttaaaacaattttcagtaatacatgaaaaattgaaaagataaaatagtgta 2868

                      
Query: 506  ttatgatatt 515
            ||||||||||
Sbjct: 2867 ttatgatatt 2858


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8368
Number of Sequences: 1807
Number of extensions: 8368
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)