BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF07RM1.SCF screened BAC_end
(926 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig975 918 0.0
>3x_Contig975
Length = 5628
Score = 918 bits (463), Expect = 0.0
Identities = 498/507 (98%), Gaps = 2/507 (0%)
Strand = Plus / Plus
Query: 48 tgattgattaagtaataagaactttctgagcatttcgatcaatagctacggtatggaaga 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3977 tgattgattaagtaataagaactttctgagcatttcgatcaatagctacggtatggaaga 4036
Query: 108 agtacgagattaatagtactgaccttcttagtcatgtagtttgacatattctcttttttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4037 agtacgagattaatagtactgaccttcttagtcatgtagtttgacatattctcttttttt 4096
Query: 168 gtacctgcgttacatttagaaagcacaacgaaggagtgtttctattgtagcagttattgt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4097 gtacctgcgttacatttagaaagcacaacgaaggagtgtttctattgtagcagttattgt 4156
Query: 228 tgtccaacgcttggttactttaattacggcatagaatattattattttagttgttacgca 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4157 tgtccaacgcttggttactttaattacggcatagaatattattattttagttgttacgca 4216
Query: 288 aaagtgaagttgaagaattcagaaacggaaaattaagttcaaggacatttaaagcaatac 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4217 aaagtgaagttgaagaattcagaaacggaaaattaagttcaaggacatttaaagcaatac 4276
Query: 348 gatagatccaagggtttaattgctttgaacctttaaatgtgcaaaggtgaagggagaggg 407
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 4277 gatagatccaagggtttaattgctttgaacc-ttaaatgtgcaaaggtgaagggagaggg 4335
Query: 408 acacataacccaaccacatatatattgaccgtcgtgctttgacctaccgactattgaact 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4336 acacataacccaaccacatatatattgaccgtcgtgctttgacctaccgactattgaact 4395
Query: 468 tttactattccgttctatacgttacagcactttttaagggttttcttttgggtttttgcc 527
|||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 4396 tttactattccgttctatacgttacagcac-tttaaagggttttcttttgggtttttgca 4454
Query: 528 agaaattttttttcgggccgtttttaa 554
|| || ||||||||| | ||||||||
Sbjct: 4455 ggagatattttttcggtctgtttttaa 4481
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9397
Number of Sequences: 1807
Number of extensions: 9397
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 926
length of database: 10,358,551
effective HSP length: 16
effective length of query: 910
effective length of database: 10,329,639
effective search space: 9399971490
effective search space used: 9399971490
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)