BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF08FM1.SCF screened BAC_end
(916 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig824 1061 0.0
>3x_Contig824
Length = 4266
Score = 1061 bits (535), Expect = 0.0
Identities = 558/565 (98%), Gaps = 1/565 (0%)
Strand = Plus / Plus
Query: 87 tcgaagctaaaggagtacaggtatgttactcgatcatagagatgaactacattctgtttc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3477 tcgaagctaaaggagtacaggtatgttactcgatcatagagatgaactacattctgtttc 3536
Query: 147 ctttcttgcaaggaaatgatgaaaaggtgatcatgagttactaaccacatcgattaaaat 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3537 ctttcttgcaaggaaatgatgaaaaggtgatcatgagttactaaccacatcgattaaaat 3596
Query: 207 tgaatgaagttaccaaggtgaggacaggtcgattatctctaagtatactttgaagccatt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3597 tgaatgaagttaccaaggtgaggacaggtcgattatctctaagtatactttgaagccatt 3656
Query: 267 ctggtctcaatttgtgaaaatttttccattatggatggcacctaatgttgttacgctttc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3657 ctggtctcaatttgtgaaaatttttccattatggatggcacctaatgttgttacgctttc 3716
Query: 327 agggtttggattcatcattgttaatgttttgacagtcttgtacttaaatccaaccttaga 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3717 agggtttggattcatcattgttaatgttttgacagtcttgtacttaaatccaaccttaga 3776
Query: 387 tcaagaacagccacgttgggcatacttttcgtatgcgttaggtctcttcttgtatcaaac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3777 tcaagaacagccacgttgggcatacttttcgtatgcgttaggtctcttcttgtatcaaac 3836
Query: 447 gtttgatgcatgtgatggagcacatgcacgtcggacaggccaatcggggccgttgggtga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3837 gtttgatgcatgtgatggagcacatgcacgtcggacaggccaatcggggccgttgggtga 3896
Query: 507 attgtttgatcattgtattgatgcattgaacactactctgncaatgtttatattttgttc 566
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 3897 attgtttgatcattgtattgatgcattgaacactactctgtcaatgtttatattttgttc 3956
Query: 567 tgngtgtggcgttggatataaaccgatgattcctttcatccagtttcgctttgttgtggc 626
|| ||||||||||||||||||||||||||| | |||||||||| ||||||||||||||
Sbjct: 3957 tgtgtgtggcgttggatataaaccgatgatacttttcatccag-ttcgctttgttgtgca 4015
Query: 627 acttctatttgagtacttgggaaga 651
|||||||||||||||||||||||||
Sbjct: 4016 acttctatttgagtacttgggaaga 4040
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7389
Number of Sequences: 1807
Number of extensions: 7389
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 916
length of database: 10,358,551
effective HSP length: 16
effective length of query: 900
effective length of database: 10,329,639
effective search space: 9296675100
effective search space used: 9296675100
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)