BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF08RM1.SCF screened BAC_end
(945 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1265 1170 0.0
>3x_Contig1265
Length = 8324
Score = 1170 bits (590), Expect = 0.0
Identities = 660/678 (97%), Gaps = 4/678 (0%)
Strand = Plus / Minus
Query: 39 actcacgcttatcaattgatgacaagcaacgtacctttgtggttggatacggcattcaaa 98
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2006 actcaagcttatcaattgatgacaagcaacgtacctttgtggttggatacggcattcaaa 1947
Query: 99 acaagagattttcttagtaagtggttgggtgggatacagtcgattaagggttttgagggt 158
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1946 acaagagattttcttagtaagtggttgggtgggatacagtcgattaagggttttgagggt 1887
Query: 159 tctgcgaagccgctaaaagtaggcgataaagcagatttcttcgacgttgtcaaagtgtct 218
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1886 tctgcgaagccgctaaaagtaggcgataaagcagatttcttcgacgttgtcaaagtgtcg 1827
Query: 219 ttttatgaactatttttgaagtctactgacaagcatttaagtgtattggtagcattgcaa 278
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1826 gatgatgaactatttttgaagtctactgacaagcatttaagtgtattggtagcattgcta 1767
Query: 279 atcaagaaccacgatgacctgagaaatgaattcagaatagccaccagtgtggttacctac 338
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 1766 atcaagaaccacgatgacctgagaaatgaattcagaatagccaccagtgtggtcacctac 1707
Query: 339 aatttttttggcagggtgtacatgctgcctgtgtctatgagcacatggctttattgttag 398
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1706 aatttttttggcagggtgtacatgctgcctgtgtctatg-gcacatggctttattgttag 1648
Query: 399 gtccatgttggataaactcgagcccatttgaaacttatgccaacatatggtaaaaaatat 458
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1647 gtccatgttggataaactcgagcccatttgaaacttatgccaacatatggtaaaaaatat 1588
Query: 459 ggtggatctgtggtgtttgggcttgcagtcatataacaattaacatacataatatcatca 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1587 ggtggatctgtggtgtttgggcttgcagtcatataacaattaacatacataatatcatca 1528
Query: 519 ctattacatctttaaatctcggtcacctataccacctcagaaaatacagctctagagttg 578
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1527 ctattacatctttaaatctcggtcacctataccacctcagaaaatacagctctagagttg 1468
Query: 579 tcagctgataaatgctagctaagaattttgtat-atacatcgtaatttacaggt-aattt 636
||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct: 1467 tcagctgataaatgctagctaggaattttgtataatacatcgtaatttacaggtaaattt 1408
Query: 637 ctgcgatgcctgtcattacttttcaac-aaggcaatgcaagatatatcggtttggccttg 695
||||||||||||||| ||||||||||| |||||||||||||||| |||||| ||| ||||
Sbjct: 1407 ctgcgatgcctgtcaatacttttcaacaaaggcaatgcaagataaatcggtatggtcttg 1348
Query: 696 aaaccggattttcctgca 713
||||| ||| ||||||||
Sbjct: 1347 aaacctgatattcctgca 1330
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6433
Number of Sequences: 1807
Number of extensions: 6433
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 945
length of database: 10,358,551
effective HSP length: 16
effective length of query: 929
effective length of database: 10,329,639
effective search space: 9596234631
effective search space used: 9596234631
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)