BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF09FM1.SCF screened BAC_end
(952 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1330 1179 0.0
>3x_Contig1330
Length = 7703
Score = 1179 bits (595), Expect = 0.0
Identities = 683/706 (96%), Gaps = 5/706 (0%)
Strand = Plus / Minus
Query: 88 gatagatttcgtagtgcaatcttattatgacttggatcatttttatacagcgggatctta 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4524 gatagatttcgtagtgcaatcttattatgacttggatcatttttatacagcgggatctta 4465
Query: 148 caaagaagaacgtaatccacatacatcttctcattgacccatgttgtactttgcaacctc 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4464 caaagaagaacgtaatccacatacatcttctcattgacccatgttgtactttgcaacctc 4405
Query: 208 tctctgagtgctgaaaaatattgctctgcgagatcaatgcgatgagtctcttcaatcaat 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4404 tctctgagtgctgaaaaatattgctctgcgagatcaatgcgatgagtctcttcaatcaat 4345
Query: 268 aacgtaacaagatcgttagtgatctgaaaatcttgctctaatgaaagctggaaaccgcca 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4344 aacgtaacaagatcgttagtgatctgaaaatcttgctctaatgaaagctggaaaccgcca 4285
Query: 328 tccttcaaatatcgcagacatcgtatagcctgatttatcaatgtataatactgacgaagt 387
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 4284 tccttcaaatatcgcagacatcgtatagcttgatttatcaatgtataatactgacgaag- 4226
Query: 388 tccaattcagtttcaatttccgtaacaacatcatgtgcagtcaaagtgtactgtttcgag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4225 tccaattcagtttcaatttccgtaacaacatcatgtgcagtcaaagtgtactgtttcgag 4166
Query: 448 agatgatatatcaaatctaactgctgtgcttttctgctcaaggacttttgatcaaaagag 507
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4165 agatgatatatcaaatctaactgctgtgcttttctgttcaaggacttttgatcaaaagag 4106
Query: 508 atcggatcgtttagcagctcatctttgaaggtgtccatagctagtattgtgtatcataca 567
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 4105 atcggaacgtttagcagctcatctttgaaggtgtccatagctattattgtgtatcataca 4046
Query: 568 tcaaatcgaagctattttcagcatgggcatatgctgtt-cttgagacacgttaattgacg 626
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 4045 tcaatcggaagctattttcagcatgggcatatgctgttccttgagacacgttaattgacg 3986
Query: 627 tgtattattctagggcanaatggttatatgaaactttgaaatatttaaggaacccaggat 686
||||||||||||||||| |||||||||||||||||||||||||| ||||| | |||||||
Sbjct: 3985 tgtattattctagggcaaaatggttatatgaaactttgaaatatataagggaaccaggat 3926
Query: 687 ccacgac-aaaagaagaacataagt-aaccacccgtgtacctagatcgacatggtataac 744
||||||| ||||||||| |||||| ||||||| ||||| ||||||||||||||||||
Sbjct: 3925 ccacgacaaaaagaagacaataagtaaaccaccgatgtactcagatcgacatggtataac 3866
Query: 745 ttcatcaaataacaggttttggaaatgacatgaatgaactgtttac 790
|||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 3865 ttcatcaaataacagg-tttggaaatgacatgattgaactgtttac 3821
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6963
Number of Sequences: 1807
Number of extensions: 6963
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 952
length of database: 10,358,551
effective HSP length: 16
effective length of query: 936
effective length of database: 10,329,639
effective search space: 9668542104
effective search space used: 9668542104
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)