BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF09RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1728 1090 0.0
>3x_Contig1728
Length = 20685
Score = 1090 bits (550), Expect = 0.0
Identities = 688/728 (94%), Gaps = 5/728 (0%)
Strand = Plus / Minus
Query: 43 cttccccatatattttcctttatatca-gcactttaccacaatcctgtacggattgtagg 101
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 803 cttccccatatattttcctttataacaagcactttaccacaatcctgtacggattgtagg 744
Query: 102 ccagcgtcaaggtactatttcattctagtttatttttcaaaatattatctttttgcatga 161
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ccagcgtcaaggtactatttcattctagtttatttttcaaaatattatctttttgcatga 684
Query: 162 caataggggaaaactttttaagttacggatgactgaatagataaaacattcgatcttttt 221
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 683 caataggggaaaactttttaagttacggatgactgaatagataaaacattcgacctaagt 624
Query: 222 gattgcattaaacattgctggcaacgcaatccgctggagtcaattaaagttctttaattt 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gattgcattaaacattgctggcaacgcaatccgctggagtcaattaaagttctttaattt 564
Query: 282 atatggttacatagtgttttcgttccttaaatattgaatttcgttcagtcatcacgattg 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 atatggttacatagtgttttcgttccttaaatattgaatttcgttcagtcatcacgattg 504
Query: 342 aaagacctaagctttgacttagcacgaagattataatgtctnagaacgtttttcttcctc 401
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 503 aaagacctaagctttgacttagcacgaagattataatgtct-agaacgtttttcttcctc 445
Query: 402 aggaatgtgattctcggtgacatgtatgacatctggtcttgctttcttttcggcaggctt 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aggaatgtgattctcggtgacatgtatgacatctggtcttgctttcttttcggcaggctt 385
Query: 462 attccgttcattgagcatactcctttttctaggttttcgttttgcttctttctcttgagc 521
|||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||
Sbjct: 384 attccgttcattgagcatactcctttttctaggtttcggttttgcttcttcttctgaagc 325
Query: 522 agtttctaaaccctnctcatnctcatatttcattatcgtttcaagatcattctttgcgtc 581
||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ggttcctaaaccctcctcatcctcatatttcattatcgtttcaagatcattctttgcgtc 265
Query: 582 cttgacgtagttgattatatccctgaaatcgtccctgccatacattttctgaagatggtt 641
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
Sbjct: 264 cttgacgtagttgattatatccttgaaatcgtccttgccatacattttctgaagatgggt 205
Query: 642 cggtgatttcgttaaggc-gattcttcagcttacga-gttgcctttggcgggtctttcgg 699
|| ||||||||||| ||| |||||||||||| ||| ||| | || |||| ||||||||
Sbjct: 204 cgttgatttcgttagggcggattcttcagctaccgaggtttcgttcggcgtgtctttcgt 145
Query: 700 aatttttttgcccttatgttgtaagggttttgg-gaaacccaaaagctatcctttggaat 758
|||||||||| | ||||||||||||||| | || ||| || || |||||||||||||| |
Sbjct: 144 aatttttttgtcattatgttgtaagggtatcggcgaagccaaatagctatcctttggagt 85
Query: 759 tttcttta 766
||||||||
Sbjct: 84 tttcttta 77
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7055
Number of Sequences: 1807
Number of extensions: 7055
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)