BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC39ZF10FM1.SCF screened BAC_end
         (943 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1082                                                        1390   0.0  

>3x_Contig1082 
          Length = 4646

 Score = 1390 bits (701), Expect = 0.0
 Identities = 743/756 (98%), Gaps = 1/756 (0%)
 Strand = Plus / Minus

                                                                        
Query: 90   tcgacaagggcttggataatatgaggatggcaatggccttggttgacggcagagtaagca 149
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4276 tcgacaagggcttggataatatgaggatggcaatggccttggttgacggcagagtaagca 4217

                                                                        
Query: 150  gacaagaaatccaaatattcctttccttcaggatcccaaacatgggcaccactagctctg 209
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4216 gacaagaaatccaaatattcctttccttcaggatcccaaacatgggcaccactagctctg 4157

                                                                        
Query: 210  ctgaaaacaacaggcaaaggatggtagttatgagcagagtattcttgttcgtattcgata 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4156 ctgaaaacaacaggcaaaggatggtagttatgagcagagtattcttgttcgtattcgata 4097

                                                                        
Query: 270  gtcttggcagacgataagttcaattcagcagtgacaaccatggtatttctctgtattgat 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4096 gtcttggcagacgataagttcaattcagcagtgacaaccatggtatttctctgtattgat 4037

                                                                        
Query: 330  acaattatattattaattcttattgctcattgaataatcaaaaagagatattcaatgtat 389
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4036 acaattatattattaattcttattgctcattgaataatcaaaaagagatattcaatgtat 3977

                                                                        
Query: 390  gaaccatactgaatctaagtgactacttttaccaaagatgttgaatcgtcttctgttcct 449
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3976 gaaccatactgaatctaagtgactacttttaccaaagatgttgaatcgtcttctgttcct 3917

                                                                        
Query: 450  cttgtctcttatatatgagaaaaaaaagatccgctttgaaaagttccatgtcatggcata 509
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3916 cttgtctcttatatatgagaaaaaaaagatccgctttgaaaagttccatgtcatggcata 3857

                                                                        
Query: 510  ttccatgccattacaatttccaaatgacaacttgcgctagctntagtcgaaagtccccgc 569
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 3856 ttccatgccattacaatttccaaatgacaacttgcgctagctttagtcgaaagtccccgc 3797

                                                                        
Query: 570  accgctcgttatcattatcacatagaggatattttgtcactctgtcactgccagaaaacg 629
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3796 accgctcgttatcattatcacatagaggatattttgtcactctgtcactgccagaaaacg 3737

                                                                        
Query: 630  attaacattattccaaagggtagttaagttgaagttaccccgatttatggtctgtgtgaa 689
            |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 3736 attaacattattccaaagggtagttaagtgaaagttaccccgatttatggtctgtgtgaa 3677

                                                                        
Query: 690  gaacgacagcgcgcgaaactgaattccgggttttgcgcgtagtggactgtgaaaactcgc 749
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 3676 gaacgacagcgcgcgaaactgaattccgggttttgcgcgtagtggactgtgaaacctcgc 3617

                                                                        
Query: 750  tcttcgatgcccttaagggagtgaaccttttccacatataaaaagtggatcttaaagctg 809
            |||||||||| |||| |||||||||| |||||   |||||||||||| ||||||||||||
Sbjct: 3616 tcttcgatgcacttaggggagtgaactttttcacaatataaaaagtg-atcttaaagctg 3558

                                                
Query: 810  ttgggtttgacaaagaaaacaatggaacaggtgctt 845
            |||| ||||||||||||||| |||||||||||||||
Sbjct: 3557 ttggttttgacaaagaaaacgatggaacaggtgctt 3522


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7146
Number of Sequences: 1807
Number of extensions: 7146
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 943
length of database: 10,358,551
effective HSP length: 16
effective length of query: 927
effective length of database: 10,329,639
effective search space: 9575575353
effective search space used: 9575575353
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)