BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF10RM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1632 1118 0.0
>3x_Contig1632
Length = 13927
Score = 1118 bits (564), Expect = 0.0
Identities = 682/709 (96%), Gaps = 12/709 (1%)
Strand = Plus / Plus
Query: 43 cttctttgttgaacttgttgaacatttctccattcacctacggtttgaccgtcgttcaag 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1562 cttctttgttgaacttgttgaacatttctccattcacctacggtttgaccgtcgttcaag 1621
Query: 103 tttacgacaacggtcaagtcttcccagcttccatcttggatatcactgacgatgaattga 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1622 tttacgacaacggtcaagtcttcccagcttccatcttggatatcactgacgatgaattga 1681
Query: 163 tctctcacttcatctctgctgtcaacaccattgcttgtgtttccttggctgctggttacc 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1682 tctctcacttcatctctgctgtcaacaccattgcttgtgtttccttggctgctggttacc 1741
Query: 223 caaccttgccatctgtcggtcactctttgatcaacaactacaaggacttgttggctgtcg 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1742 caaccttgccatctgtcggtcactctttgatcaacaactacaaggacttgttggctgtcg 1801
Query: 283 ctatcgctgctgactacatctacccagaaattgaagaattgaaggacagaattgagaacc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1802 ctatcgctgctgactacatctacccagaaattgaagaattgaaggacagaattgagaacc 1861
Query: 343 cagatgcttacgcttctgctgccccagttgctgctgcttccggctcttccgaagctgctg 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1862 cagatgcttacgcttctgctgccccagttgctgctgcttccggctcttccgaagctgctg 1921
Query: 403 ctgaagaagctccagctgaagaagaagaagaatctgatgacgacatgggtttcggtttgt 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1922 ctgaagaagctccagctgaagaagaagaagaatctgatgacgacatgggtttcggtttgt 1981
Query: 463 tcgattaaacaccttataattatggaaaccaaatacattaaattntaaa-tcacatatcg 521
||||||||||||||||||||||||||||| | | |||||||| |||| ||||||||||
Sbjct: 1982 tcgattaaacaccttataattatggaaacaataacaattaaattttaaattcacatatcg 2041
Query: 522 gtttcagatgatcaatctgtatctataagtttagttagcctttattattttctatcttaa 581
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 2042 gtttcagatgatcaatctgtatctataagtttagttagtctttattaatttctatcttaa 2101
Query: 582 gcgcacaaatcttatcgcatcaaattatcgtgtcttcatggggcgac-attaattgtttt 640
||||||||||||||||||||||||||||||||||||||| |||||| ||| ||| |||
Sbjct: 2102 gcgcacaaatcttatcgcatcaaattatcgtgtcttcat--ggcgacaatttatttgttt 2159
Query: 641 tttgcctgtctaaagcggcccgctccattagtagggtaggtcagattatttgcctaatat 700
||||||||||| |||||| |||||||| |||||| ||||||||||||||| |||||||
Sbjct: 2160 tttgcctgtct-aagcggtccgctcca-tagtagtgtaggtcagattatt--gctaatat 2215
Query: 701 ttgaagaataaactgacgttcgaacacacaactagattaaccgttcact 749
|||||||| ||||||||| ||| ||||| ||||||||| ||||||||||
Sbjct: 2216 ttgaagaa-aaactgacg-tcggacaca-aactagatt-accgttcact 2260
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,124
Number of Sequences: 1807
Number of extensions: 11124
Number of successful extensions: 335
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)