BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF11RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1468 1007 0.0
>3x_Contig1468
Length = 9852
Score = 1007 bits (508), Expect = 0.0
Identities = 596/624 (95%), Gaps = 1/624 (0%)
Strand = Plus / Minus
Query: 50 actagccagagtaagctctgttttaaagtttatttcctaatattataatgaatgtatagt 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 actagccagagtaagctctgttttaaagtttatttcctaatattataatgaatgtatagt 600
Query: 110 aagatttatataatgtacagaattcaatcggagtaaaccgagcttgatggcttttatgtc 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 aagatttatataatgtacagaattcaatcggagtaaaccgagcttgatggcttttatgtc 540
Query: 170 tttcgattctctcctccaatatcaataacggttaacaatggaatagagttttcctaggaa 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 tttcgattctctcctccaatatcaataacggttaacaatggaatagagttttcctaggaa 480
Query: 230 ctataaatcacattaccaactttctgggtaatttgatccaagagtaaggcatcatatttg 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ctataaatcacattaccaactttctgggtaatttgatccaagagtaaggcatcatatttg 420
Query: 290 tgtttttgatcatctcgtatatctcaatgcattaggttaaagttccttttgaaaaaaaaa 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 tgtttttgatcatctcgtatatctcaatgcattaggttaaagttccttttgaaaaaaaaa 360
Query: 350 gaaagagaggtgaaagtaggggcagacgtatcccctcgaattagtttgtggttttcatgt 409
|||||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 359 gaaagataggtgaaagtaggggcagacgtatcccctcgaattagttttttgttttcatgt 300
Query: 410 ctacaattctccacgtttcttagacggaatgtaatttgtattctctttgggggctatgtg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 ctacaattctccacgtttcttagacggaatgtaatttgtattctctttgggggctatgtg 240
Query: 470 cattgggtgctgctatgttgagcctggcgaattatttgatttcgcaagcgtggtctttct 529
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 239 cattgggtgctgctatgttgagcctggcgaattattttatttcgcaagcgtggtctttct 180
Query: 530 tgaatgtgctagagtgtctaaaacttcgtcaaacgcgcggtccatttgttcttcttgctg 589
||||||||||||| | ||||||||||| |||||| | | ||||||| |||||||| ||
Sbjct: 179 tgaatgtgctagattttctaaaacttcctcaaactctctttccattttttcttctttctt 120
Query: 590 tactttttcctcgctactataatcgctatcagaatacccatcaccttttcttctcctgca 649
||||| || | ||||||||||| |||||| ||||||||||||| ||||||||||| ||
Sbjct: 119 tacttcttaatacctactataatccctatcataatacccatcacc-tttcttctccttca 61
Query: 650 gattggcttcaactcctacgaccc 673
||| | ||||||||||| ||||
Sbjct: 60 cattatcatcaactcctactaccc 37
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8613
Number of Sequences: 1807
Number of extensions: 8613
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)