BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF12FM1.SCF screened BAC_end
(960 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig805 952 0.0
>3x_Contig805
Length = 3584
Score = 952 bits (480), Expect = 0.0
Identities = 613/656 (93%), Gaps = 1/656 (0%)
Strand = Plus / Plus
Query: 86 cttttcataccaagaaaagcagtttttaaacgcgtcttccgttatatcagcttatgattc 145
||||||||||||| ||||||||||||||||| |||||| ||| | | | |||| |
Sbjct: 1855 cttttcataccaataaaagcagtttttaaacaaatcttccaaaataactgataatgaaac 1914
Query: 146 atggatggctaatattatattcaatataatatttcagttttatacattccattttgacac 205
|| |||| ||||| |||||| ||||||||||||||| ||||||| || || | |||||
Sbjct: 1915 attaatggggaatatgatattcgatataatatttcagtgttatacaatcaatatagacac 1974
Query: 206 actccccaaatttatcgaagttatgtcatggaatgattggactgatggtatttttggaac 265
||||||||| || |||||| | || |||||||||||||||||||||||||||||||||||
Sbjct: 1975 actccccaagttaatcgaaataatatcatggaatgattggactgatggtatttttggaac 2034
Query: 266 cttgaaaactttcaatgttgattctcaattagtcggtttgttgtgtctcttcaatgtgtg 325
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2035 cttgaaaactgtcaatgttgattctcaattagtcggtttgttgtgtctcttcaatgtgtg 2094
Query: 326 gagtgtcatccctgtcactcatcgtaaacgggtggttactactattatcgacgagttatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2095 gagtgtcatccctgtcactcatcgtaaacgggtggttactactattatcgacgagttatg 2154
Query: 386 gaatctactgtctgttgatactgacttccacatcataagcattctttttcataaattact 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2155 gaatctactgtctgttgatactgacttccacatcataagcattctttttcataaattact 2214
Query: 446 cgtgttcaaaatactcccggataaagatctttcaacggatcagattcatgccatcaaaca 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2215 cgtgttcaaaatactcccggataaagatctttcaacggatcagattcatgccatcaaaca 2274
Query: 506 taaattctatgccatatataaagaagtttggcaaattattaacgttttgaactgtgacta 565
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 2275 taaattctatgccataaataaagaggtttggcaaattattaacgttttgaactgtgacta 2334
Query: 566 cactgaattagttgatgagaatacggtattatttttccataccaatattaagttaatact 625
||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||
Sbjct: 2335 cactgaattagttgatgagaaaacggtattatttttccataccaataataggttaatact 2394
Query: 626 agagcgtcaagaaccattgtatgaagaagaccctctactcgtaagccagtgtttgcatgc 685
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct: 2395 agagcgtcaagaaccattgtatgaagaagacctcctactcgtaagccagtgtatgcatgc 2454
Query: 686 agaagcaaattacaaaaatgttaacaacaccggcattgttcattaatttgtcacgg 741
|||||||||| |||||||||| ||||||||| |||||||||| |||| ||||||||
Sbjct: 2455 agaagcaaataacaaaaatgtcaacaacacc-gcattgttcaataatatgtcacgg 2509
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7525
Number of Sequences: 1807
Number of extensions: 7525
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 960
length of database: 10,358,551
effective HSP length: 16
effective length of query: 944
effective length of database: 10,329,639
effective search space: 9751179216
effective search space used: 9751179216
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)