BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC39ZF12RM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig910 775 0.0
3x_Contig1039 149 1e-35
>3x_Contig910
Length = 3140
Score = 775 bits (391), Expect = 0.0
Identities = 465/485 (95%), Gaps = 4/485 (0%)
Strand = Plus / Minus
Query: 268 aatggcaaggattcacgcaacttgtgtggaccagcagatggtcttggtgcgtaacaaccg 327
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 3140 aatggcaaggat-cacgcaacttgtgtggttt-gcagatggtcttggtgcgtaacaaccg 3083
Query: 328 gacaacttgtccaacatccaatgatgtggagctgctaatctctttagatgcttctttctg 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3082 gacaacttgtccaacatccaatgatgtggagctgctaatctctttagatgcttctttctg 3023
Query: 388 ttattaaaatttttttgtagtgacaaaaaatacaatgttagtaaatcgttgcttcatagg 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3022 ttattaaaatttttttgtagtgacaaaaaatacaatgttagtaaatcgttgcttcatagg 2963
Query: 448 tgtgcagcatgggaaaagcttattgcaattcagatatggattcgcgttcatgaaggttat 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2962 tgtgcagcatgggaaaagcttattgcaattcagatatggattcgcgttcatgaaggttat 2903
Query: 508 gatgatgttatcttaatcactttaatattcgttactgtaagtctgctatctaacatcaat 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2902 gatgatgttatcttaatcactttaatattcgttactgtaagtctgctatctaacatcaat 2843
Query: 568 tccagaattcaatctcccatanacatactagatattgacacgttagtccagttcaacata 627
||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
Sbjct: 2842 tccagaattcaatctcccataaacatactagaaattgacacgttagtccagttcaacaaa 2783
Query: 628 ctgcctctttatatccgttcaacttcaggtagtaatctgttcttatttggatgtcatgta 687
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2782 ctgcctcttataatccgttcaacttcaggtagtaatctgttcttatttggatgtcatgta 2723
Query: 688 tttacttaagttcttcttatgtcacccggttttatttgaacacccatttcgattgccatt 747
||||||| |||||||| |||||| ||||| | |||||||||| || |||||||||||||
Sbjct: 2722 attacttaggttcttctaatgtca-ccggtataatttgaacacaca-ttcgattgccatt 2665
Query: 748 tncaa 752
| |||
Sbjct: 2664 tccaa 2660
>3x_Contig1039
Length = 4866
Score = 149 bits (75), Expect = 1e-35
Identities = 92/95 (96%), Gaps = 2/95 (2%)
Strand = Plus / Minus
Query: 44 cttcttcatcagtgatacggtggatagcgaatctacccttaacatcgtagacc-aatctg 102
|||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||
Sbjct: 94 cttcttcatcagtgatacggtggacagcgaatctaccct-aacatcgtagacccaatctg 36
Query: 103 aagttttcgttggtagcttccaaggtgataacatc 137
|||||||||||||||||||||||||||||||||||
Sbjct: 35 aagttttcgttggtagcttccaaggtgataacatc 1
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7455
Number of Sequences: 1807
Number of extensions: 7455
Number of successful extensions: 45
Number of sequences better than 1.0e-20: 2
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)